Journal Articles - UP - MSI
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- Influence of tidal location on morphology, photosynthesis and pigments of the agarophyte, Gelidiella acerosa, from Northern PhilippinesGanzon-Fortes, E. T. (Springer, 1997-12)The red seaweed agarophyte, Gelidiella acerosa (Forsskål) (Feldmann& Hamel) was collected from tidepools, high intertidal rocks, and shallow subtidal areas along a reef flat in Ilocos Norte, northern Philippines. The three populations were compared during the summer (dry) and rainy (wet) seasons to determine changes in morphology and photoacclimation capacity as possible use in mariculture. During summer months (February to April) after exposure to environmental extremes (i.e. the highest percent of minus tides during daylight, high light regimes, desiccation, and solar bleaching), the populations differed in their morphologies and responses to increasing irradiance levels (P–I curve). Tidepool plants were the tallest, bushiest, and with increased diameter of cortical cells; while, high intertidal plants were the shortest, with sparse branching pattern and decreased diameter of cortical cells. Although their saturation irradiances indicated shade tolerance (Ik = 52 − 112 µmol photon m -2 s-1). Their differential light saturation curves (P-I curves) suggested a capacity to acclimate to ambient light regimes. For example, plants from the high intertidal zone showed higher photosynthetic rates and saturation irradiances, slightly lower initial slopes of the P-I curves and levels of light harvesting accessory pigments, rphycoerhythrin (R-PE) and rphycocyanin (R-PC), after being exposed to higher light regimes. In contrast, plants from tidepools and shallow subtidal areas had lower photosynthetic rates and saturation irradiances, slightly steeper initial slopes of the P-I curves and levels of R-PE and R-PC, having been exposed to lower light regimes. During the rainy months (June to November) no significant responses in these parameters were recorded. Comparison of the P-I responses of vegetative and tetrasporic plants showed these to vary with season. The data suggest that when plants became reproductive their physiological fitness either was unchanged or slightly enhanced. These results indicate that all three populations of G. acerosa could be used as seed stock for mariculture.
- Contrasting recolonization strategies in multi-species seagrass meadowsRollon, Rene N.; Van Steveninck, Erik D.De Ruyter; Van Vierssen, Wim; Fortes, Miguel D. (Elsevier BV, 1999-12)This study shows that in a multi-species seagrass meadow in a shallow and clear-water site, all the former seagrass species were able to recolonize in the artificially created gaps of 0.25 m2 in size within ca. 2 yr. Extrapolation of the recolonization curves of the different species predicted a full recovery within 10 yr post-disturbance. Fitted curves for the dominant species Enhalus acoroides and Thalassia hemprichii showed contrasting strategies, the latter having a comparatively high intrinsic rate, achieving full recovery within ca. 2 yr post-disturbance. E. acoroides was the latest species to establish and the projected full-recovery time was among the longest (ca. 10 yr). The effect of timing of gap creation was generally not significant (except for Syringodium isoetifolium) neither was the temporal variation in density of most species outside the gaps. As recolonization by sexual propagules was found to be low, increasing the gap size would most probably require a much longer recovery period. A crude estimate for E. acoroides would be >10 yr for 1 m2 of gap. Further, since the densities of most seagrass species vary significantly between sites, and colonization rates depend on adjacent seagrass densities, the recovery curves would also be different across sites.
- Physiological and ecological aspects of coral transplantationYap, H. T.; Alvarez, R. M.; Custodio, H. M.; Dizon, R. M. (Elsevier BV, 1998-10)The growth and mortality of transplants of two species of scleractinian corals, Porites cylindrica Dana and P. rus Forskal (1775), were monitored over 16 months in a reef in the northwestern Philippines. Transplants were in two sizes (nubbin, ∼8 cm in length; and fist-sized, ∼8 cm in diameter) and deployed at two depths (1 and 10 m). Specimens at the shallow depth had more rapid growth than the deeper ones. Light had significant effects on coral growth while temperature, salinity, water motion and sedimentation did not. Smaller corals consistently registered greater percentage increases in size as compared to the larger ones. Small transplants of P. cylindrica showed higher percentage growth rates than those of P. rus. Contrary to expectations, there were no differences in transplant mortality due to size. Over the course of the experiment, mortality was generally confined to the shallow depth. It was brought about either by algal competition or by strong water movement.
- Molecular phylogeny of three unarmored dinoflagellates from Masinloc Bay, Zambales, Central Luzon, with a description of the morphology of Gymnodinium catenatum H.W.GrahamBenico, Garry; Azanza, Rhodora (Science and Technology Information Institute, 2021-10-27)Unambiguous identification of unarmored dinoflagellates is important in distinguishing toxic from non-toxic species occurring in the coastal waters of the Philippines. In this study, molecular phylogeny inferred from rDNA sequences of Gymnodinium catenatum, Gymnodinium impudicum, and Akashiwo sanguinea-collected from Masinloc Bay, Zambales, Central Luzon-is reported for the first time. Morphology of G. catenatum was critically examined using light and confocal laser scanning microscopy. The three unarmored dinoflagellates were identified as G. catenatum, G. impudicum, and A. sanguinea based on their phylogenetic positions inferred from LSU and SSU rDNA. Both G. catenatum and G. impudicum grouped in a well-supported clade of Gymnodinium sensu stricto, which includes other genera of unarmored dinoflagellates, confirming the polyphyly of the clade. Akashiwo sanguinea separated into four subclades, which is similar to previous reports-with our strain grouping with sequences from Malaysia, Singapore, and China. Cellular characteristics of our G. catenatum are congruent with earlier reports particularly its long chain-forming habit (up to 64 cells) and large cell size (44.6-63.3 µm long). Our result is the first verified record of G. impudicum and A. sanguinea in the Philippines, and the first record of G. catenatum as another highly toxic dinoflagellate species occurring in Masinloc Bay.
- Low coral bleaching prevalence at the Bolinao-Anda Reef Complex, northwestern Philippines during the 2016 thermal stress eventQuimpo, Timothy Joseph R.; Requilme, Jeremiah Noelle C.; Gomez, Elizabeth J.; Sayco, Sherry Lyn G.; Tolentino, Mark Paulo S.; Cabaitan, Patrick C. (Elsevier BV, 2020-11)Here, we examined the coral bleaching responses during the 2016 thermal stress event and post-bleaching changes in coral communities in the heavily disturbed reefs of the Bolinao-Anda Reef Complex (BARC), northwestern Philippines. Less than 25% of colonies bleached, with 77% attributed to five genera (Dipsastrea, Porites, Fungia, Seriatopora, and Montipora). Coral bleaching prevalence was associated with site location, coral composition, and coral abundance, suggesting that small-scale variation (<20 km) in coral communities (taxa and density) influences spatial variation in coral bleaching prevalence. There was no noticeable change in coral composition and cover two years after the bleaching event as exposure to chronic disturbance likely selected for the dominance of stress tolerant coral taxa and communities. Results show that the 2016 thermal stress event caused coral bleaching but with low prevalence at the BARC, which suggests that disturbed reefs may provide spatial refuge to coral communities from thermal stress.We acknowledge M Ponce, F Castrence, R de Guzman, G de Guzman, R Adolfo, and R Uriarte for the field assistance; and boatmen and administration from the Bolinao Marine Laboratory of the UPMSI (University of the Philippines Marine Science Institute) for their valuable assistance in the logistics and field works. We are grateful to R Dizon for kindly reading and providing suggestions that improved the manuscript. This study was funded by the OVCRD (Office of the Vice Chancellor for Research and Development) Outright Research Grant (Project No. 161607 PNSE) and the Marine Science Institue In-house Research Grant of the University of the Philippines; and grants from the Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development of the Department of Science and Technology (QMSR-MRRD-MEC-295-1449 and QMSR-MRRD-MEC314-1542) of PC Cabaitan.
- Characterization of the hidden break in giant clam 28S ribosomal RNATan, Keana; Conaco, Cecilia (Oxford University Press, 2021-09)The molluscan 28S ribosomal RNA (rRNA) naturally cleaves into two fragments of similar size as 18S rRNA. This phenomenon, known as the hidden break, has been described in many other protostome species. Here, we characterize the 28S rRNA hidden break region in seven giant clam species, Tridacna gigas, T. derasa, T. maxima, T. noae, T. crocea, Hippopus hippopus and H. porcellanus. We confirm that the break consistently occurs in giant clams and is observed in all tissues and developmental stages. The region of the giant clam 28S rRNA break is located at a position homologous to the well-characterized 28S rRNA break in insects. High AU content and a stem–loop secondary structure in the region may contribute to fragmentation of the 28S rRNA molecule. An awareness of the existence of the hidden break in molluscs, such as the giant clams, which are emerging systems for understanding how environmental change affects life in the ocean, will facilitate progress of RNA sequencing-based analyses that currently rely on standard RNA profiles as a measure of sample integrity.The authors would like to thank Dr Ronnie Estrellada of the Semirara Marine Laboratory and Hatchery for generously providing giant clam samples, the Bolinao Marine Laboratory for providing access to the Silaqui Island Giant Clam Ocean Nursery and Niño Dan Posadas for sharing sponge RNA. This work was supported by a grant to C.C. from the Philippine Council for Agriculture, Aquaculture and Natural Resources Research and Development of the Department of Science and Technology (grant no. QMSR-MRRD-MEC-314-1545).
- Evolutionary trends in large pelagic filter-feedersStiefel, Klaus M. (Informa UK Limited, 2020-01-16)This paper attempts a synthesis of the evolution of large pelagic filter-feeding animals from the Cambrian to the present. Lineages known or suspected to have evolved large pelagic filter-feeding species are, in the order of their appearance, stem euarthropods, agnathan fishes, nautiloid cephalopods, placoderms, sharks, bony fishes, reptiles, ammonite cephalopods, and mammals. I discuss evolutionary trends which are apparent from the evolution of the large pelagic filter-feeding niche, which are 1. a size increase relative to their ancestral species, 2. the transition between taxonomic groups giving rise to pelagic filter-feeders, with vertebrates dominating the post-Cambrian, 3. the evolution of large pelagic filter-feeders from large carnivores in most, but not all cases, and 4. lengthy gaps in the record of pelagic filter-feeders around four of the big five mass extinctions.
- Chemical profiling of the Arctic sea lettuce Ulva lactuca (Chlorophyta) mass-cultivated on land under controlled conditions for food applicationsRoleda, Michael Y.; Lage, Sandra; Aluwini, Daniel Fonn; Rebours, Céline; Brurberg, May Bente; Nitschke, Udo; Gentili, Francesco G. (Elsevier BV, 2021-03)The increasing use of seaweeds in European cuisine led to cultivation initiatives funded by the European Union. Ulva lactuca, commonly known as sea lettuce, is a fast growing seaweed in the North Atlantic that chefs are bringing into the local cuisine. Here, different strains of Arctic U. lactuca were mass-cultivated under controlled conditions for up to 10 months. We quantified various chemical constituents associated with both health benefits (carbohydrates, protein, fatty acids, minerals) and health risks (heavy metals). Chemical analyses showed that long-term cultivation provided biomass of consistently high food quality and nutritional value. Concentrations of macroelements (C, N, P, Ca, Na, K, Mg) and micronutrients (Fe, Zn, Co, Mn, I) were sufficient to contribute to daily dietary mineral intake. Heavy metals (As, Cd, Hg and Pb) were found at low levels to pose health risk. The nutritional value of Ulva in terms of carbohydrates, protein and fatty acids is comparable to some selected fruits, vegetables, nuts and grains.
- Assessing the viability of commercial media for the mass culture of Chaetoceros muelleriCabanayan-Soy, Rona; de Peralta, Glycinea; Juinio–Meñez, Marie Antonette (National Fisheries Research and Development Institute, 2021-12)The microalgae Chaetoceros muelleri is considered a highly nutritious feed for the cultured larvae of the tropical sea cucumber Holothuria scabra. Due to the cost of analytical grade culture media used in the production of C. muelleri, there is a need to evaluate cheap alternative commercial media to decrease the cost of producing quality live microalgal food. In this study, two different indoor batch culture systems (1 L glass bottles and 10 L plastic carboys) were used to evaluate the effectiveness of two conventional (modified F/2 and Walne’s) and one commercial (Epizyme AGP complete) microalgal culture media. Results of the 1 L glass bottle experiment showed that the peak cell density of C. muelleri in AGP (1,241 ± 116 x 104 cells ml-1) was not significantly different from the modified F/2 (1,584 ± 41 x 104 cells ml-1) and Walne’s medium (1,319 ± 162 x 104 cells ml-1) (Kruskal-Wallis test, p=0.78). Likewise, in the plastic carboy experiment, the maximum cell density of C. muelleri in Walne’s medium (750 ± 144 x 104 cells ml-1) and F/2 medium (653 ± 79 x 104 cells ml-1) were higher, but not significantly different from AGP (496 ± 184 x 104 cells ml-1) (Kruskal-Wallis test, p=0.43). The highest growth rate in the glass bottle cultures was the modified F/2 (0.38 div day-1), while AGP was the lowest (0.34 div. day-1). On the other hand, in carboy culture, AGP was higher (0.17 div.day-1) compared to modified F/2 (0.15 div. day-1) and Walne’s medium (0.13 div. day-1). The exponential growth phase was similar in the glass bottles, while in the carboy, the exponential phase was reached at a shorter time in the AGP treatment than those in the modified F/2 and Walne’s media. The findings showed that AGP medium is an adequate alternative to replace the conventional media (modified F/2 and Walne’s) during the secondary stock culture for C. muelleri. The viability of using cheaper and more readily available commercial AGP media for the indoor culture production of C. muelleri can contribute to cost-effective scaling-up of the hatchery production of quality H. scabra larvae and early juveniles.The authors would like to thank Dr. Rene Abesamis for his valuable comments and the two anonymous reviewers for their suggestions to improve the manuscript. We are also grateful for the guidance of Ms. Elsie Tech in improving the microalgal cultures and providing valuable inputs for this paper. We also thank the Sea Cucumber Research Team and the staff of the University of the Philippines - Marine Science Institute, Bolinao Marine Laboratory for their support and assistance during the conduct of the study. We would also like to acknowledge the Department of Science and Technology Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (DOST-PCAARRDQSR-MR-CUC.02.02) and the Australian Centre for International Agricultural Research (ACIAR – FIS/2003/059) for the financial support in the conduct of this study.
- Genetic differentiation and signatures of local adaptation revealed by RADseq for a highly dispersive mud crab Scylla olivacea (Herbst, 1796) in the Sulu SeaMendiola, Michael John R.; Ravago‐Gotanco, Rachel (Wiley, 2021-05-04)Connectivity of marine populations is shaped by complex interactions between biological and physical processes across the seascape. The influence of environmental features on the genetic structure of populations has key implications for the dynamics and persistence of populations, and an understanding of spatial scales and patterns of connectivity is crucial for management and conservation. This study employed a seascape genomics approach combining larval dispersal modeling and population genomic analysis using single nucleotide polymorphisms (SNPs) obtained from RADseq to examine environmental factors influencing patterns of genetic structure and connectivity for a highly dispersive mud crab Scylla olivacea (Herbst, 1796) in the Sulu Sea. Dispersal simulations reveal widespread but asymmetric larval dispersal influenced by persistent southward and westward surface circulation features in the Sulu Sea. Despite potential for widespread dispersal across the Sulu Sea, significant genetic differentiation was detected among eight populations based on 1,655 SNPs (FST = 0.0057, p < .001) and a subset of 1,643 putatively neutral SNP markers (FST = 0.0042, p < .001). Oceanography influences genetic structure, with redundancy analysis (RDA) indicating significant contribution of asymmetric ocean currents to neutral genetic variation (R2adj = 0.133, p = .035). Genetic structure may also reflect demographic factors, with divergent populations characterized by low effective population sizes (Ne < 50). Pronounced latitudinal genetic structure was recovered for loci putatively under selection (FST = 0.2390, p < .001), significantly correlated with sea surface temperature variabilities during peak spawning months for S. olivacea (R2adj = 0.692–0.763; p < .050), suggesting putative signatures of selection and local adaptation to thermal clines. While oceanography and dispersal ability likely shape patterns of gene flow and genetic structure of S. olivacea across the Sulu Sea, the impacts of genetic drift and natural selection influenced by sea surface temperature also appear as likely drivers of population genetic structure. This study contributes to the growing body of literature documenting population genetic structure and local adaptation for highly dispersive marine species, and provides information useful for spatial management of the fishery resource.This project was funded by the Department of Science and Technology—Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development (DOST-PCAARRD project no. QSR-IA-MCR.05.01), and implemented by the University of the Philippines—Marine Science Institute (UP-MSI). MJM acknowledges support provided by the DOST-Accelerated Science and Technology Human Resource Development Program (ASTHRDP; Thesis Grant) and the UP-MSI (Thesis Writing Grant). We are deeply thankful to Dr. Evangeline Magdaong, Jeniffer De Maligaya, and Benedict Castro of the Physical Oceanography Laboratory, UP-MSI headed by Dr. Cesar Villanoy for the larval dispersal biophysical modeling, Angela Camille Aguila and Simon Alcantara for laboratory assistance, Bhenjamin Ona for the remote sensing data, Dr. Din Matias for analysis recommendations, Von Yip for QGIS assistance, and Dr. Richard Mualil and Yunadzmal Ong of Mindanao State University (MSU Tawi-Tawi) for sample collection. We also thank Sharon Magnuson and Chris Bird (Genomics Core Lab, Texas A&M University, Corpus Christi) for performing the RAD sequencing. We thank the reviewers whose comments and insights greatly improved the manuscript. This is MSI contribution number 483.