Journal Articles - UP - MSI
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- Root production and belowground seagrass biomassDuarte, C. M.; Merino, M.; Agawin, N.; Uri, J.; Fortes, M. D.; Gallegos, M. E.; Marbá, N.; Hemminga, M. A. (Inter-Research Science Center, 1998)The root and rhizome biomass of the seagrass species present in 3 mixed and 2 monospecific meadows representative of different floras (Spanish Mediterranean, Mexican Caribbean, Kenyan coast, and the South China Sea off The Philippines) was examined to test for the existence of general patterns in the distribution of their biomass in the sediments, and to test a simple approach based on age determinations to estimate root production. The thickness of the roots was scaled to the thickness of the seagrass rhizomes (r = 0.92, p < 0.001). Root and rhizome biomass were high (>100 and >200 g DW m-2, respectively) for the mixed meadows examined; these belowground structures had a projected surface area often exceeding 1m2 m-2 when roots and rhizomes were considered together, and they formed a dense web of root material comprising several hundred meters per square meter. Belowground biomass showed considerable vertical stratification within the sediments, with a tendency for the larger species to extend deeper into the sediments than smaller ones. This tendency for segregation should reduce the potential interspecific competition for sediment resources, which is likely to be greater in the uppermost layers, where the belowground biomass is more evenly distributed among species. The rate of adventitious root production on vertical shoots varied from species that produced a root on almost every node to species that produced 1 adventitious root for every 10 nodes. Root production--both on horizontal rhizomes and vertical shoots--was substantial, with the combined root production approaching, or exceeding, 1000 g DW m-2 yr-1. The resulting root turnover was quite high, with most values ranging between 2 and 10 yr-1, indicative of a characteristic turnover time of months for the root compartment. The estimates of root production derived here often exceed those of rhizome production and reach values comparable to leaf production, clearly demonstrating that root production is an important component (up to 50%) of total seagrass production.
- Damage and recovery of four Philippine corals from short-term sediment burialWesseling, I.; Uychiaoco, A. J.; Aliño, P. M.; Aurin, T.; Vermaat, J. (Inter-Research Science Center, 1999)Recovery of corals after full burial with littoral sediment (16% silt, 46% fine sand and 38% coarse sand; 28% CaCO3) was monitored in 2 field experiments at the reefs off Lucero, Bolinao (Pangasinan, NW Philippines), from April to May 1996. In the first experiment at 2 m depth, Porites was buried for 0, 6, 20 and 68 h; a second experiment was done at 5 m depth and 4 common taxa (Porites, Galaxea, Heliopora and Acropora) were buried for 20 h. At 2 m depth, Porites was not affected by 6 h burial compared to the controls that were not buried. Increasing burial time had increasingly more serious effects. Burial for 20 h resulted in increased discoloration of the coral tissue. After 68 h of burial, up to 90% of the tissue bleached in the first days. About 50% of this tissue disappeared subsequently and bare coral skeleton became exposed or were covered with algae. After a few weeks, however, recovery took place: the bare areas were recolonized from surrounding surviving tissue or from highly retracted polyps in the affected area. In the corals that had been buried for 20 h no more significant differences from the controls were observed after 3 wk. For those that were buried for 68h, this was the case after 4 wk. At 5 m depth, all Acropora died after the 20 h burial treatment, but the other taxa recovered in a comparable way to the Porites in the first experiment at 2 m depth. It is concluded that complete burial will cause considerable whole-colony mortality in at least Acropora, and thus may result in a permanent loss of coral taxa from reefs that are subject to such intense sedimentation events. Less sensitive taxa incur substantial damage but significant recovery was observed after a month.
- Biochemical mapping of Pyrodinium bahamense unveils molecular underpinnings behind organismal processesSubong, Bryan John J.; Malto, Zabrina Bernice L.; Lluisma, Arturo O.; Azanza, Rhodora V.; Salvador-Reyes, Lilibeth A. (MDPI, 2021-12-11)Proteins, lipids, and carbohydrates from the harmful algal bloom (HAB)-causing organism Pyrodinium bahamense were characterized to obtain insights into the biochemical processes in this environmentally relevant dinoflagellate. Shotgun proteomics using label-free quantitation followed by proteome mapping using the P. bahamense transcriptome and translated protein databases of Marinovum algicola, Alexandrium sp., Cylindrospermopsis raciborskii, and Symbiodinium kawagutii for annotation enabled the characterization of the proteins in P. bahamense. The highest number of annotated hits were obtained from M. algicola and highlighted the contribution of microorganisms associated with P. bahamense. Proteins involved in dimethylsulfoniopropionate (DMSP) degradation such as propionyl CoA synthethase and acryloyl-CoA reductase were identified, suggesting the DMSP cleavage pathway as the preferred route in this dinoflagellate. Most of the annotated proteins were involved in amino acid biosynthesis and carbohydrate degradation and metabolism, indicating the active roles of these molecules in the vegetative stage of P. bahamense. This characterization provides baseline information on the cellular machinery and the molecular basis of the ecophysiology of P. bahamense.
- Summer heatwave impacts on the European kelp Saccharina latissima across its latitudinal distribution gradientDiehl, Nora; Roleda, Michael Y.; Bartsch, Inka; Karsten, Ulf; Bischof, Kai (Frontiers Media SA, 2021-10-11)Kelps are important foundation species in coastal ecosystems currently experiencing pronounced shifts in their distribution patterns caused by ocean warming. While some populations found at species’ warm distribution edges have been recently observed to decline, expansions of some species have been recorded at their cold distribution edges. Reduced population resilience can contribute to kelp habitat loss, hence, understanding intraspecific variations in physiological responses across a species’ latitudinal distribution is crucial for its conservation. To investigate potential local responses of the broadly distributed kelp Saccharina latissima to marine heatwaves in summer, we collected sporophytes from five locations in Europe (Spitsbergen, Bodø, Bergen, Helgoland, Locmariaquer), including populations exposed to the coldest and warmest local temperature regimes. Meristematic tissue from sporophytes was subjected to increasing temperatures of Δ+2, Δ+4 and Δ+6°C above the respective mean summer temperatures (control, Δ±0°C) characteristic for each site. Survival and corresponding physiological and biochemical traits were analyzed. Vitality (optimum quantum yield, Fv/Fm) and growth were monitored over time and biochemical responses were measured at the end of the experiment. Growth was highest in northern and lowest in southern populations. Overall, northern populations from Spitsbergen, Bodø and Bergen were largely unaffected by increasing summer temperatures up to Δ+6°C. Conversely, sporophytes from Helgoland and Locmariaquer were markedly stressed at Δ+6°C: occurrence of tissue necrosis, reduced Fv/Fm, and a significantly elevated de-epoxidation state of the xanthophyll cycle (DPS). The variations in phlorotannins, mannitol and tissue C and N contents were independent of temperature treatments and latitudinal distribution pattern. Pronounced site-specific variability in response to increasing temperatures implies that exceeding a threshold above the mean summer temperature exclusively affect rear-edge (southernmost) populations.Abiotic temperature data used in this manuscript were produced with the Giovanni online data system, developed and maintained by the NASA GES DISC. Sampling in France was conducted in accordance with the French legislation on the Access to Genetic Resources and Benefit-Sharing. We also acknowledge the MODIS mission scientists and associated NASA personnel for the production of the data used in this research effort. This study has been conducted at the Alfred Wegener Institute for Polar and Marine Research (AWI), Bremerhaven and at the AWIPEV Research Station in Ny-Ålesund, Svalbard. We are grateful to the station staff of AWIPEV for support and logistics and to the scientific diving teams on Spitsbergen and Helgoland for sampling. We thank A. Wagner (AWI) for sampling support on Helgoland and his support in the setting up of the experiments, and also J. Müller (University of Rostock) for running the C:N analyzer. B. Meyer-Schlosser (University of Bremen) supported sampling and pigment analyses.
- Linking thallus morphology with P-I curves of 50 macrobenthic algae from Bolinao, Pangasinan, PhilippinesSaco, Jayvee; Ganzon-Fortes, Edna (Science and Technology Information Institute, 2022-08-04)This study demonstrated that thallus morphology could affect a species' capacity to utilize light for photosynthesis and, hence, will affect its productivity. Fifty (50) macroalgal species collected from an intertidal habitat in Bolinao, Pangasinan, Philippines were grouped into five "functional-forms" based on their inferred productivity: functional-form group (FFG) A: very thin tubes/sheets/strips, FFG B: thin sheets/delicately branched, FFG C: medium-thick blade/coarsely branched with dense ramuli, FFG D: heavily thick branches/segments or with moderate calcification, and FFG E: heavily calcified. Their photosynthesis-irradiance (P-I) curves were determined through the measurement of oxygen evolved in a closed system after 1-h incubation under six different light treatments. P-I curve parameters such as P n max , I k , I c , α, and R d were assessed to determine the groups' physiological responses to light. The thickness of thallus blades, coarseness of branches, complex branching, and calcification appeared to lessen photosynthetic capacity, as shown by the significantly decreasing trend of P n max from FFGs A-E. FFG A also showed the steepest slope (highest mean α value) compared with the rest of the functional-form groups, indicating their efficiency to utilize low light for photosynthesis. Light saturation and compensation values were less distinct in differentiating the functional form groups, probably because the seaweeds examined were all collected from the same shallow intertidal zone, suggesting their acclimation to similar photon flux densities. Results from this study fit the prediction of the function form hypothesis for seaweeds quite well.Appreciation is extended to: [1] the Philippine Council for Aquatic, Agricultural, and Natural Resources Research and Development of the Department of Science and Technology as thesis grant to the first author; [2] the UP-CS-MSI research grant to the second author; [3] the Commission on Higher Education for the financial support; and [4] the staff of the Bolinao Marine Laboratory, UP-MSI, and the Batangas State University for their assistance. Helpful critics and recommendations from Dr. Rhodora Azanza and Dr. Wilfredo Uy are acknowledged, most especially to the late Dr. Ronald Villanueva, to whom this paper is wholeheartedly dedicated. Also, deep appreciation is extended to the reviewers for greatly improving the manuscript of this paper.
- Short‐term responses of coral reef microphytobenthic communities to inorganic nutrient loadingDizon, Romeo M.; Yap, Helen T. (Wiley, 1999-07)The responses of coral reef flat microphytobenthos to short-term exposure to elevated levels of inorganic nitrogen (N) and phosphorus (P) were investigated in 1994 and 1995. Sand samples collected from the reef flat were maintained over 7 d in triplicate cultures with N-enriched (100 µM NO3), P-enriched (10 µM PO4), and ambient seawater. A fourth experiment used a treatment of combined N and P enrichment. The sediment samples were assessed for chlorophyll a (Chl a) content and photosynthesis-irradiance (P-I) responses. P-I curves, constructed from area-and Chl a-specific metabolic rates, showed consistently higher maximal rates in the nutrient enriched samples. Sediments exposed to enhanced levels of N exhibited the highest Chl a content while both N- and P-enriched samples showed increased photosynthetic yield. Very little depletion of nutrients in the water column was detected over time in the batch cultures except in the N:P-enriched treatments where nutrient values dropped to near-ambient levels. Results from these experiments point to N and P colimitation in tropical carbonate sediments.
- Differentiating two closely related Alexandrium species using comparative quantitative proteomicsSubong, Bryan John J.; Lluisma, Arturo O.; Azanza, Rhodora V.; Salvador-Reyes, Lilibeth A. (MDPI AG, 2020-12-23)Alexandrium minutum and Alexandrium tamutum are two closely related harmful algal bloom (HAB)-causing species with different toxicity. Using isobaric tags for relative and absolute quantitation (iTRAQ)-based quantitative proteomics and two-dimensional differential gel electrophoresis (2D-DIGE), a comprehensive characterization of the proteomes of A. minutum and A. tamutum was performed to identify the cellular and molecular underpinnings for the dissimilarity between these two species. A total of 1436 proteins and 420 protein spots were identified using iTRAQ-based proteomics and 2D-DIGE, respectively. Both methods revealed little difference (10–12%) between the proteomes of A. minutum and A. tamutum, highlighting that these organisms follow similar cellular and biological processes at the exponential stage. Toxin biosynthetic enzymes were present in both organisms. However, the gonyautoxin-producing A. minutum showed higher levels of osmotic growth proteins, Zn-dependent alcohol dehydrogenase and type-I polyketide synthase compared to the non-toxic A. tamutum. Further, A. tamutum had increased S-adenosylmethionine transferase that may potentially have a negative feedback mechanism to toxin biosynthesis. The complementary proteomics approach provided insights into the biochemistry of these two closely related HAB-causing organisms. The identified proteins are potential biomarkers for organismal toxicity and could be explored for environmental monitoring.
- Variability and potential of seaweeds as ingredients of ruminant diets: An in vitro studyde la Moneda, Ana; Carro, Maria Dolores; Weisbjerg, Martin R.; Roleda, Michael Y.; Lind, Vibeke; Novoa-Garrido, Margarita; Molina-Alcaide, Eduarda (MDPI AG, 2019-10-22)This study was designed to analyze the chemical composition and in vitro rumen fermentation of eight seaweed species (Brown: Alaria esculenta, Laminaria digitata, Pelvetia canaliculata, Saccharina latissima; Red: Mastocarpus stellatus, Palmaria palmata and Porphyra sp.; Green: Cladophora rupestris) collected in Norway during spring and autumn. Moreover, the in vitro ruminal fermentation of seventeen diets composed of 1:1 oat hay: concentrate, without (control diet) or including seaweeds was studied. The ash and N contents were greater (p < 0.001) in seaweeds collected during spring than in autumn, but autumn-seaweeds had greater total extractable polyphenols. Nitrogen in red and green seaweeds was greater than 2.20 and in brown seaweeds, it was lower than 1.92 g/kg DM. Degradability after 24 h of fermentation was greater in spring seaweeds than in autumn, with Palmaria palmata showing the greatest value and Pelvetia canaliculata the lowest. Seaweeds differed in their fermentation pattern, and autumn Alaria esculenta, Laminaria digitata, Saccharina latissima and Palmaria palmata were similar to high-starch feeds. The inclusion of seaweeds in the concentrate of a diet up to 200 g/kg concentrate produced only subtle effects on in vitro ruminal fermentation.
- Distribution, temporal change, and conservation status of tropical seagrass beds in Southeast Asia: 2000–2020Sudo, Kenji; Quiros, T. E. Angela L.; Prathep, Anchana; Luong, Cao Van; Lin, Hsing-Juh; Bujang, Japar Sidik; Ooi, Jillian Lean Sim; Fortes, Miguel D.; Zakaria, Muta Harah; Yaakub, Siti Maryam; Tan, Yi Mei; Huang, Xiaoping; Nakaoka, Masahiro (Frontiers Media SA, 2021-07-08)Although Southeast Asia is a hotspot of global seagrass diversity, there are considerable information gaps in the distribution of seagrass beds. Broad-scale seagrass distribution has not been updated in the global seagrass database by UNEP-WCMC since 2000, although studies on seagrasses have been undertaken intensively in each region. Here we analyze the recent distribution of tropical seagrass beds, their temporal changes, causes of decline and conservation status in Southeast Asia (plus southern mainland China, Taiwan and Ryukyu Island of Japan) using data collected after 2000. Based on the 195 literature published since 2000, we identified 1,259 point data and 1,461 polygon data showing the distribution of seagrass beds. A large discrepancy was found in the seagrass bed distribution between our updated data and the UNEP-WCMC database, mostly due to inaccurate and low resolution location information in the latter. Temporal changes in seagrass bed area analyzed for 68 sites in nine countries/regions demonstrated that more than 60% of seagrass beds declined at an average rate of 10.9% year–1, whereas 20% of beds increased at an average rate of 8.1% year–1, leading to an overall average decline of 4.7% year–1. Various types of human-induced threats were reported as causes for the decline, including coastal development, fisheries/aquaculture, and natural factors such as typhoons and tsunamis. The percentage of seagrass beds covered with existing marine protected areas (MPAs) varied greatly among countries/regions, from less than 1% in Brunei Darussalam and Singapore to 100% in southern Japan. However, the degree of conservation regulation was not sufficient even in regions with higher MPA coverage. The percentage of seagrass beds within EBSAs (Ecologically and Biologically Significant Area determined by the Convention of Biological Diversity) was higher than that within MPAs because EBSAs cover a greater area than MPAs. Therefore, designating EBSAs as legally effective MPAs can greatly improve the conservation status of seagrass beds in Southeast Asia.This manuscript is a contribution to the Asia-Pacific Marine Biodiversity Observation Network (AP-MBON) of the Group on Earth Observations Biodiversity Observation Network (GEO BON). We are grateful to the members of Phuket Marine Biological Center in Thailand and the Vietnam Academy of Science and Technology for providing local literature and data on seagrass bed distribution. This paper is dedicated to Chittima Aryuthaka who contributed greatly to the development of marine biology and ecology in Asia during her lifetime.
- Microscopic stages of North Atlantic Laminaria digitata (Phaeophyceae) exhibit trait-dependent thermal adaptation along latitudesSchimpf, Nele M.; Liesner, Daniel; Franke, Kiara; Roleda, Michael Y.; Bartsch, Inka (Frontiers Media SA, 2022-06-17)Kelp forests in the North Atlantic are at risk of decline at their warm temperature distribution margins due to anthropogenic temperature rise and more frequent marine heat waves. To investigate the thermal adaptation of the cold-temperate kelp Laminaria digitata, we sampled six populations, from the Arctic to Brittany (Spitsbergen, Tromsø, Bodø [all Norway], Helgoland [Germany], Roscoff and Quiberon [both France]), across the species’ entire distribution range, spanning 31.5° latitude and 12-13°C difference in mean summer sea surface temperature. We used pooled vegetative gametophytes derived from several sporophytes to approximate the genetic diversity of each location. Gametophytes were exposed to (sub-) lethal high (20-25°C) and (sub-) optimal low (0-15°C) temperature gradients in two full-factorial, common-garden experiments, subjecting subsets of populations from different origins to the same conditions. We assessed survival of gametophytes, their ability to develop microscopic sporophytes, and subsequent growth. We hypothesized that the thermal performance of gametophytes and microscopic sporophytes corresponds to their local long-term thermal history. Integrated gametophyte survival revealed a uniform upper survival temperature (UST) of 24°C among five tested populations (Tromsø to Quiberon). In contrast, following two weeks of thermal priming of gametophytes at 20-22°C, sporophyte formation at 15°C was significantly higher in southern populations (Quiberon and Roscoff) compared to the high-latitude population of Tromsø. Between 0-15°C, survival of the Arctic population (Spitsbergen) was negatively correlated with increasing temperatures, while the southern-most population (Quiberon) showed the opposite. Thus, responses of survival at low, and sporophyte formation at high temperatures, support the concept of local adaption. On the other hand, sporophyte formation between 0-15°C peaked at 6-9°C in the Quiberon and at 9-12°C in the Spitsbergen population. Sporophyte growth rates (GR) both in length and width were similar for Spitsbergen, Tromsø and Quiberon; all had maximum GRs at 12-15°C and low GRs at 0-6°C. Therefore, responses of sporophyte formation and growth at low temperatures do not reflect ecotypic adaptation. We conclude that L. digitata populations display trait-dependent adaptation, partly corresponding to their local temperature histories and partly manifesting uniform or unpredictable responses. This suggests differential selection pressures on the ontogenetic development of kelps such as L. digitata.We would like to thank A. Wagner for the sampling and clonal isolation of kelp material and technical assistance in the laboratory, C. Daniel for support with the image analysis, L. Foqueau for the SST data, C. Gauci for statistical advice and S. DeAmicis for supervision in this BSc Thesis.