Journal Articles - UP - MSI

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Molecular phylogeny of three unarmored dinoflagellates from Masinloc Bay, Zambales, Central Luzon, with a description of the morphology of Gymnodinium catenatum H.W.Graham
Benico, Garry; Azanza, Rhodora (Science and Technology Information Institute, 2021-10-27)
Unambiguous identification of unarmored dinoflagellates is important in distinguishing toxic from non-toxic species occurring in the coastal waters of the Philippines. In this study, molecular phylogeny inferred from rDNA sequences of Gymnodinium catenatum, Gymnodinium impudicum, and Akashiwo sanguinea-collected from Masinloc Bay, Zambales, Central Luzon-is reported for the first time. Morphology of G. catenatum was critically examined using light and confocal laser scanning microscopy. The three unarmored dinoflagellates were identified as G. catenatum, G. impudicum, and A. sanguinea based on their phylogenetic positions inferred from LSU and SSU rDNA. Both G. catenatum and G. impudicum grouped in a well-supported clade of Gymnodinium sensu stricto, which includes other genera of unarmored dinoflagellates, confirming the polyphyly of the clade. Akashiwo sanguinea separated into four subclades, which is similar to previous reports-with our strain grouping with sequences from Malaysia, Singapore, and China. Cellular characteristics of our G. catenatum are congruent with earlier reports particularly its long chain-forming habit (up to 64 cells) and large cell size (44.6-63.3 µm long). Our result is the first verified record of G. impudicum and A. sanguinea in the Philippines, and the first record of G. catenatum as another highly toxic dinoflagellate species occurring in Masinloc Bay.
Low coral bleaching prevalence at the Bolinao-Anda Reef Complex, northwestern Philippines during the 2016 thermal stress event
Quimpo, Timothy Joseph R.; Requilme, Jeremiah Noelle C.; Gomez, Elizabeth J.; Sayco, Sherry Lyn G.; Tolentino, Mark Paulo S.; Cabaitan, Patrick C. (Elsevier BV, 2020-11)
Here, we examined the coral bleaching responses during the 2016 thermal stress event and post-bleaching changes in coral communities in the heavily disturbed reefs of the Bolinao-Anda Reef Complex (BARC), northwestern Philippines. Less than 25% of colonies bleached, with 77% attributed to five genera (Dipsastrea, Porites, Fungia, Seriatopora, and Montipora). Coral bleaching prevalence was associated with site location, coral composition, and coral abundance, suggesting that small-scale variation (<20 km) in coral communities (taxa and density) influences spatial variation in coral bleaching prevalence. There was no noticeable change in coral composition and cover two years after the bleaching event as exposure to chronic disturbance likely selected for the dominance of stress tolerant coral taxa and communities. Results show that the 2016 thermal stress event caused coral bleaching but with low prevalence at the BARC, which suggests that disturbed reefs may provide spatial refuge to coral communities from thermal stress.
We acknowledge M Ponce, F Castrence, R de Guzman, G de Guzman, R Adolfo, and R Uriarte for the field assistance; and boatmen and administration from the Bolinao Marine Laboratory of the UPMSI (University of the Philippines Marine Science Institute) for their valuable assistance in the logistics and field works. We are grateful to R Dizon for kindly reading and providing suggestions that improved the manuscript. This study was funded by the OVCRD (Office of the Vice Chancellor for Research and Development) Outright Research Grant (Project No. 161607 PNSE) and the Marine Science Institue In-house Research Grant of the University of the Philippines; and grants from the Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development of the Department of Science and Technology (QMSR-MRRD-MEC-295-1449 and QMSR-MRRD-MEC314-1542) of PC Cabaitan.
Expanding ocean food production under climate change
Free, Christopher M.; Cabral, Reniel B.; Froehlich, Halley E.; Battista, Willow; Ojea, Elena; O’Reilly, Erin; Palardy, James E.; García Molinos, Jorge; Siegel, Katherine J.; Arnason, Ragnar; Juinio–Meñez, Marie Antonette; Fabricius, Katharina; Turley, Carol; Gaines, Steven D. (Springer, 2022-04-27)
As the human population and demand for food grow, the ocean will be called on to provide increasing amounts of seafood. Although fisheries reforms and advances in offshore aquaculture (hereafter ‘mariculture’) could increase production, the true future of seafood depends on human responses to climate change. Here we investigated whether coordinated reforms in fisheries and mariculture could increase seafood production per capita under climate change. We find that climate-adaptive fisheries reforms will be necessary but insufficient to maintain global seafood production per capita, even with aggressive reductions in greenhouse-gas emissions. However, the potential for sustainable mariculture to increase seafood per capita is vast and could increase seafood production per capita under all but the most severe emissions scenario. These increases are contingent on fisheries reforms, continued advances in feed technology and the establishment of effective mariculture governance and best practices. Furthermore, dramatically curbing emissions is essential for reducing inequities, increasing reform efficacy and mitigating risks unaccounted for in our analysis. Although climate change will challenge the ocean’s ability to meet growing food demands, the ocean could produce more food than it does currently through swift and ambitious action to reduce emissions, reform capture fisheries and expand sustainable mariculture operations.
Precipitation stable isotopic signatures of tropical cyclones in Metropolitan Manila, Philippines, show significant negative isotopic excursions
Jackisch, Dominik; Yeo, Bi Xuan; Switzer, Adam D.; He, Shaoneng; Cantarero, Danica Linda M.; Siringan, Fernando P.; Goodkin, Nathalie F. (Copernicus GmbH, 2022-01-28)
Tropical cyclones have devastating impacts on the environment, economies, and societies and may intensify in the coming decades due to climate change. Stable water isotopes serve as tracers of the hydrological cycle, as isotope fractionation processes leave distinct precipitation isotopic signatures. Here we present a record of daily precipitation isotope measurements from March 2014 to October 2015 for Metropolitan Manila, a first-of-a-kind dataset for the Philippines and Southeast Asia. We show that precipitation isotopic variation at our study site is closely related to tropical cyclones. The most negative shift in δ18O values (−13.84 ‰) leading to a clear isotopic signal was caused by Typhoon Rammasun, which directly hit Metropolitan Manila. The average δ18O value of precipitation associated with tropical cyclones is −10.24 ‰, whereas the mean isotopic value for rainfall associated with non-cyclone events is −5.29 ‰. Further, the closer the storm track is to the sampling site, the more negative the isotopic values are, indicating that in situ isotope measurements can provide a direct linkage between isotopes and typhoon activities in the Philippines.
This research was supported by the Earth Observatory of Singapore (EOS) via its funding from the National Research Foundation Singapore and the Ministry of Education of Singapore under the Research Centres of Excellence initiative. This work comprises EOS contribution no. 422. This study is also the part of the IAEA Coordinated Research Project (CRP code: F31004) on “Stable Isotopes in Precipitation and Paleoclimatic Archives in Tropical Areas to Improve Regional Hydrological and Climatic Impact Models” (IAEA Research Agreement no. 17980).
C30 — A simple, rapid, scientifically valid, and low-cost method for citizen-scientists to monitor coral reefs
Licuanan, Wilfredo Y.; Mordeno, Princess Zyrlyn B.; Go, Marco V. (Elsevier, 2021-09)
The extent and speed of recent changes in reef coral abundances due to ocean warming and human impacts require more widespread capability to map and measure these changes, especially in countries like the Philippines. We present “C30”, a simple, rapid, scientifically valid, and low-cost method for skin divers or freedivers to take random photo-quadrat images within predefined stations on the upper reef slope. C30 yields coral cover data similar to those collected using the more intensive C5 method and can be as powerful in detecting small differences in reef cover. Less time is also needed for training personnel and sampling. However, more photo-quadrat images, better cameras, and closer collaboration with local scientists are required if higher precision data and estimates of coral diversity are needed from C30. C30 is a valuable tool for participatory, community-based citizen science monitoring of coral reefs.
We thank the Department of Science and TechnologyPhilippine Council for Agriculture, Aquatic and Natural Resources Research and Development (QMSR-MRRD-COR-0-1209 and PCAARRD-GIA 4478), and the Department of Environment and Natural Resources Coral Reef Visualization and Assessment, The Philippines Project for funding some of the fieldwork. The initial research on citizen-science monitoring was undertaken with funding from Oscar M. Lopez Center for Climate Change Adaptation and Disaster Risk Management Foundation, Inc., The Philippines (Grant number OMLC RG 2017-18). We also thank the DLSU Innovation and Technology Office for the patent application for the C30 monopod in the Intellectual Property Office of the Philippines. The comments and suggestions of the reviewers are acknowledged and are very much appreciated. WY Licuanan is the holder of the Br H Alfred Shields FSC Professorial Chair in Biology and Br Cresentius Richard Duerr FSC Professorial Chair in Biochemistry.
Characterization of Alexandrium tamutum (Dinophyceae) isolated from Philippine waters, with the rare detection of paralytic shellfish toxin
Benico, Garry; Azanza, Rhodora (Association of Systematic Biologists of the Philippines, 2022-04-01)
Alexandrium tamutum M.Montressor, A.Beran & U.John is a non-toxic, bloom-forming dinoflagellate species commonly reported in temperate waters. In this study, 8 cultures of A. tamutum established from Bolinao Channel and Manila Bay, Philippines were characterized in terms of their morphology, phylogeny and toxicity. Cells were roundish, measuring 25.5 –29.84 µm long and 26.2–28.45 µm wide. The nucleus is equatorially elongated and located at the center of the cell. The chloroplasts are numerous, golden brown in color and radially arranged. Thecal tabulation is typical of Alexandrium: APC, 4', 6'', 6c, 6s, 5''', 2''''. Shape of the taxonomically informative thecal plates such as sixth precingular plate (6'') and posterior sulcal plate (sp) was similar to A. tamutum, which confirms the species identity. However, the presence of anterior and posterior attachment pores observed in our cultured isolates is the first case in this species. Molecular phylogeny inferred from LSU rDNA and ITS supports our identification by forming a well-supported clade composed of A. tamutum strains from other geographic regions. HPLC analysis showed that A. tamutum is generally non-toxic except for strain ATC9 which has low amount of decarbamoylsaxitoxin (dcSTX), resulting to a toxicity of 0.07 fmole STX eq per cell. The present study reports the first verified occurrence of Philippine A. tamutum with reliable morphological and molecular information, including the first record in Manila Bay and first detection of PST in one strain at a certain culture period.
We acknowledge the Department of Science and Technology Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (DOST PCAARRD) and the University of the Philippines-The Marine Science Institute (UP-MSI) for the funding support. We are grateful for the assistance of Joshua Vacarizas, Keith Pinto and Jenelyn Mendoza for the molecular and toxicity analyses of the cultures. We also acknowledge Estrelita Flores, Emelita Eugenio and Jayson Orpeza for their assistance during the fieldwork and other logistical support.
Effect of the Intensified Sub‐Thermocline Eddy on strengthening the Mindanao undercurrent in 2019
Azminuddin, Fuad; Lee, Jae Hak; Jeon, Dongchull; Shin, Chang‐Woong; Villanoy, Cesar; Lee, Seok; Min, Hong Sik; Kim, Dong Guk (American Geophysical Union, 2022-02)
The northward-flowing Mindanao Undercurrent (MUC) was directly measured by acoustic Doppler current profilers from a subsurface mooring at about 8°N, 127°E during 2 years (November 2017–December 2019). Its depth covers a range from 400 m to deeper than 1,000 m with its core appearing at around 900 m. The mean velocity of MUC's core was approximately 5.8 cm s−1 with a maximum speed of about 47.6 cm s−1. The MUC was observed as a quasi-permanent current with strong intraseasonal variability (ISV) with a period of 70–80 days. Further analyses with an eddy-resolving circulation model output suggest that the ISV is closely related to sub-thermocline eddies (SEs). In this study, two types of SEs near the Philippine coast are disclosed: the westward propagating SE (SE-1) and the quasi-stational SE southeast of Mindanao Island (SE-2). The SE-1 has both cyclonic and anticyclonic polarities with the propagation speed of 7–8 cm s−1, while the SE-2 is an anticyclonic eddy that moves erratically within 4–8°N, 127–130°E with the mean translation speed of about 11 cm s−1. Even though the SE-1 plays an important role in modulating the MUC, our results show that the observed strong MUC event (May–July 2019) is evidently induced by the intensified SE-2 that moves northwestward. This study emphasizes that the SE-2 when intensified, receives more energy from the strengthened New Guinea Coastal Undercurrent and loses the energy northward along the Philippine coast by intensifying the MUC.
This study was part of the project entitled “study on air–sea interaction and process of rapidly intensifying Typhoon in the northwestern Pacific” (PM61670) funded by the Ministry of Oceans and Fisheries, Rep. of Korea. This study was also partly supported by the project entitled “Influences of the Northwest Pacific circulation and climate variability on the Korean water changes and material cycle I—The role of Jeju warm current and its variability” (PEA0011) funded by Korea Institute of Ocean Science and Technology (KIOST). The mooring data used in this study were provided by KIOST and are available from the KIOST live access server (http://las.kiost.ac.kr/data_adcp/). The model data are freely available from Mercator Ocean (https://resources.marine.copernicus.eu/?option=com_csw&view=details&product_id=GLOBAL_ANALYSIS_FORECAST_PHY_001_024).
Update of seagrass cover and species diversity in Southern Viet Nam using remote sensing data and molecular analyses
Nguyen, Xuan-Vy; Lau, Va-Khin; Nguyen-Nhat, Nhu-Thuy; Nguyen, Trung-Hieu; Phan, Kim-Hoang; Dao, Viet-Ha; Ho-Dinh, Duan; Hayashizaki, Ken-ichi; Fortes, Miguel D.; Papenbrock, Jutta (Elsevier, 2021-05)
Along with coral reefs and mangroves, seagrass meadows are being threatened globally Southeast Asia is considered within the area of seagrasses’ cradle of diversity. However, information on the current status of seagrass beds from Southern Viet Nam is limited due to lack of reliable data about seagrass species occurring in the Southeast Asian region. One factor is the difficulty of unambiguous species identification. For example, the leaf morphological characteristics of Halophila ovalis and closely related species are overlapping which leads to misidentifications. In this study, the latest satellite Landsat 8 OLI and SENTINEL-2B image analyses were applied to determine the distribution of seagrass beds in Southern Viet Nam. Detailed morphological and genetic marker analyses were used to determine and update the species composition. The present study together with literature reviews indicate that the total area of seagrass beds from Southern Viet Nam are 10,832.1 ha. 2562 ha (or 19.1%) of seagrass coverage has been lost. The seagrass beds at Phu Quoc Island are the largest with 7579 ha. The occurrence of Halophila major is updated for almost all off-shore islands and open-water areas.
We are deeply indebted to all staff of the Department of Marine Botany, Center for Oceanographic Data, GIS and Remote Sensing, Institute of Oceanography (ION), Viet Nam, for their support, generously providing many valuable suggestions. We thank the VAST Key lab on Food and Environmental Safety (Central Viet Nam) for the ability to use their equipment. We would like to thank the three anonymous reviewers for their suggestions, comments, and editing. We also thank to JSPS Core-toCore Program CREPSUM.JPJSCCB20200009. This work was supported by Vietnam Academy of Science and Technology, grant code VAST04.01/20-21.
Survival and sexual maturity of sexually propagated Acropora verweyi corals 4 years after outplantation
Ligson, Charlon A.; Cabaitan, Patrick C. (Wiley, 2021-04-19)
Most coral reef restoration efforts are carried out over 1–2 years, and few have assessed long-term (over 3 years) outcomes. Although studies of outplantation of sexually propagated corals have reported promising initial results, few studies have followed outplanted corals to maturity. Here, we monitored sexually propagated Acropora verweyi corals for 4 years post-outplantation to determine their survival and sexual maturity. These corals were outplanted when 4 months old in two size classes (small = 0.3–0.5 cm; large = 1.0–1.5 cm) at two sites in the northwestern Philippines. Four years after outplantation, the 240 colonies of A. verweyi exhibited 17.9% survival, with mean diameters ranging from 7.48–26.8 cm. Most of the surviving outplants were gravid (81.4% of the 43 colonies) with mean diameters of at least 11.8 cm. Higher survivorship was detected in the initial large size class outplants than in the small ones at the natal site, but not at the other site. However, 4 years after outplantation, there was no significant difference in terms of geometric mean diameter between the initial size classes or between the sites. Results show that 4-month-old outplants of sexually propagated corals can survive until sexual maturity and are already capable of contributing gametes for the potential recovery of degraded coral communities at age 4 years.
The authors are grateful to Ronald de Guzman, Francis Kenith Adolfo,and Renato Adolfo for the field and hatchery assistance.This study was supported by a grant from the Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development of the Department of Science and Technology to PCC. The authors are also grateful to Prof. Peter Harrison for providing CAL a research assistantship opportunity and for additional logistical support through an Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development.
Characterizing the vertical phytoplankton distribution in the Philippine Sea off the northeastern coast of Luzon
Cordero-Bailey, Kristina; Bollozos, Iris Salud F.; Palermo, Joseph Dominic H.; Silvano, Kathleen M.; Escobar, Ma. Teresa L.; Jacinto, Gil S.; San Diego-McGlone, Maria Lourdes; David, Laura T.; Yñiguez, Aletta T. (Elsevier BV, 2021-06)
The vertical distribution of phytoplankton in the open ocean shows an increase in biomass at a depth referred to as the Subsurface Chlorophyll Maximum (SCM) that contributes significantly to the primary production of the water column. Hence, it is important to understand the dynamics that lead its formation and maintenance. This study examines the SCM in the Philippine Sea off the northeast coast of Luzon, utilizing bio-optical and empirical phytoplankton data from two oceanographic cruises conducted northeast of the island of Luzon in May/June 2011 and April/May 2012. Chlorophyll (Chl) profiles were converted to smoothed chlorophyll functions by using a b-spline basis. In 2011, the mean SCM depth was 97.24 m ± 22.33 m with mean SCM concentration of 0.43 μg/L ± 0.09 μg/L while in 2012, mean SCM was deeper at 115.45 m ± 24.25 m and mean SCM concentration of 0.31 ± 0.09 μg/L. Functional principal component analysis showed that the first principal component (PC) explained variability in the SCM depth, the second PC showed variability in the magnitude of the SCM concentration while the third PC accounted for the presence of multiple peaks. K-means clustering using the principal components resulted in three clusters which represented the offshore stations with the deepest SCM, stations within an observed cyclonic eddy with intermediate SCM and stations with coastal and shelf waters showing shallow SCM. Correlation analyses between Chl and physico-chemical and bio-optical parameters showed that Chl was positively correlated to beam attenuation, a bio-optical property that has been used as an alternative proxy for phytoplankton. This suggests that the observed SCMs represent actual increase in phytoplankton biomass. When the influence of the Kuroshio recirculation gyre was dominant in 2011, cooler temperature in surface waters was seen to significantly increase surface Chl. In 2012, highly saline waters from the tropical North Equatorial Current (NEC) waters appeared to lower the Chl distribution, particularly at the SCM. Phytoplankton abundance was recorded to be higher at the SCM than the surface in both years. In 2011, different species of diatoms dominated all clusters, except at the SCM of the coastal and shelf cluster wherein the dinoflagellate Gyrodinium grossestriatum was dominant. Most dominant species from 2011 were conspicuously absent in 2012 and there was a shift to the diatoms Fragilariopsis (surface), Thalassiosira and Rhizosolenia spp. in all clusters. These provide new insights on the phytoplankton community in relation to the changes in the oceanic circulation from subtropical North Pacific water in 2011 to tropical NEC water in 2012.
This work is Marine Science Institute contribution number 482. We would like to acknowledge Dr. Cesar Villanoy and Dr. Olivia Cabrera and the anonymous reviewers who provided invaluable inputs for the development and improvement of the paper.

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