Journal Articles - UP - MSI
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- Characterization of Alexandrium tamutum (Dinophyceae) isolated from Philippine waters, with the rare detection of paralytic shellfish toxinBenico, Garry; Azanza, Rhodora (Association of Systematic Biologists of the Philippines, 2022-04-01)Alexandrium tamutum M.Montressor, A.Beran & U.John is a non-toxic, bloom-forming dinoflagellate species commonly reported in temperate waters. In this study, 8 cultures of A. tamutum established from Bolinao Channel and Manila Bay, Philippines were characterized in terms of their morphology, phylogeny and toxicity. Cells were roundish, measuring 25.5 –29.84 µm long and 26.2–28.45 µm wide. The nucleus is equatorially elongated and located at the center of the cell. The chloroplasts are numerous, golden brown in color and radially arranged. Thecal tabulation is typical of Alexandrium: APC, 4', 6'', 6c, 6s, 5''', 2''''. Shape of the taxonomically informative thecal plates such as sixth precingular plate (6'') and posterior sulcal plate (sp) was similar to A. tamutum, which confirms the species identity. However, the presence of anterior and posterior attachment pores observed in our cultured isolates is the first case in this species. Molecular phylogeny inferred from LSU rDNA and ITS supports our identification by forming a well-supported clade composed of A. tamutum strains from other geographic regions. HPLC analysis showed that A. tamutum is generally non-toxic except for strain ATC9 which has low amount of decarbamoylsaxitoxin (dcSTX), resulting to a toxicity of 0.07 fmole STX eq per cell. The present study reports the first verified occurrence of Philippine A. tamutum with reliable morphological and molecular information, including the first record in Manila Bay and first detection of PST in one strain at a certain culture period.We acknowledge the Department of Science and Technology Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (DOST PCAARRD) and the University of the Philippines-The Marine Science Institute (UP-MSI) for the funding support. We are grateful for the assistance of Joshua Vacarizas, Keith Pinto and Jenelyn Mendoza for the molecular and toxicity analyses of the cultures. We also acknowledge Estrelita Flores, Emelita Eugenio and Jayson Orpeza for their assistance during the fieldwork and other logistical support.
- Effect of the Intensified Sub‐Thermocline Eddy on strengthening the Mindanao undercurrent in 2019Azminuddin, Fuad; Lee, Jae Hak; Jeon, Dongchull; Shin, Chang‐Woong; Villanoy, Cesar; Lee, Seok; Min, Hong Sik; Kim, Dong Guk (American Geophysical Union, 2022-02)The northward-flowing Mindanao Undercurrent (MUC) was directly measured by acoustic Doppler current profilers from a subsurface mooring at about 8°N, 127°E during 2 years (November 2017–December 2019). Its depth covers a range from 400 m to deeper than 1,000 m with its core appearing at around 900 m. The mean velocity of MUC's core was approximately 5.8 cm s−1 with a maximum speed of about 47.6 cm s−1. The MUC was observed as a quasi-permanent current with strong intraseasonal variability (ISV) with a period of 70–80 days. Further analyses with an eddy-resolving circulation model output suggest that the ISV is closely related to sub-thermocline eddies (SEs). In this study, two types of SEs near the Philippine coast are disclosed: the westward propagating SE (SE-1) and the quasi-stational SE southeast of Mindanao Island (SE-2). The SE-1 has both cyclonic and anticyclonic polarities with the propagation speed of 7–8 cm s−1, while the SE-2 is an anticyclonic eddy that moves erratically within 4–8°N, 127–130°E with the mean translation speed of about 11 cm s−1. Even though the SE-1 plays an important role in modulating the MUC, our results show that the observed strong MUC event (May–July 2019) is evidently induced by the intensified SE-2 that moves northwestward. This study emphasizes that the SE-2 when intensified, receives more energy from the strengthened New Guinea Coastal Undercurrent and loses the energy northward along the Philippine coast by intensifying the MUC.This study was part of the project entitled “study on air–sea interaction and process of rapidly intensifying Typhoon in the northwestern Pacific” (PM61670) funded by the Ministry of Oceans and Fisheries, Rep. of Korea. This study was also partly supported by the project entitled “Influences of the Northwest Pacific circulation and climate variability on the Korean water changes and material cycle I—The role of Jeju warm current and its variability” (PEA0011) funded by Korea Institute of Ocean Science and Technology (KIOST). The mooring data used in this study were provided by KIOST and are available from the KIOST live access server (http://las.kiost.ac.kr/data_adcp/). The model data are freely available from Mercator Ocean (https://resources.marine.copernicus.eu/?option=com_csw&view=details&product_id=GLOBAL_ANALYSIS_FORECAST_PHY_001_024).
- Seafloor structures and static stress changes associated with two recent earthquakes in offshore southern Batangas, PhilippinesSarmiento, Keanu Jershon S.; Aurelio, Mario A.; Flores, Paul Caesar M.; Carrillo, Anne Drew V.; Marfito, Bryan J.; Abigania, Maria Isabel T.; Daag, Arturo S.; Siringan, Fernando P. (Frontiers Media SA, 2022-02-02)The 1994 Mw 7.1 Mindoro Earthquake and the 2017 Mw 5.9 Batangas Earthquake Sequence both occurred in offshore southern Batangas and devastated southern Luzon and Mindoro. These earthquakes exhibited NW-striking right-lateral slip in an area presumably defined by a WNW-striking left-lateral fault, therefore implying the existence of previously unmapped offshore faults. High resolution multibeam bathymetry grid and subbottom profiles revealed a conjugate strike-slip fault system under an approximately EW-directed extension. NW-striking right-lateral faults (F1 Faults: Central Mindoro Fault, Aglubang River Fault, and Batangas Bay Fault System) bound the western part of the study area. On the other hand, a series of almost parallel NE-trending left-lateral and normal faults (F2 Faults: Macolod Corridor, North Verde Fault System, Central Verde Fault System, South Verde Fault, and Northeast Mindoro Fault System) approach the F1 faults from the northeast. The distribution of the 1994 and 2017 earthquakes suggests that the possible rupture areas for these events are the Aglubang River Fault and the southwest Batangas Bay Fault System, respectively. These two traces appear to be connected and a restraining bend is suggested to have acted as a rupture barrier between the two events. Coulomb stress transfer modeling showed that the 1994 earthquake promoted the failure of the 2017 earthquake. Furthermore, results from the stress transfer models showed stress increase on the F1 faults (Batangas Bay Fault System and Central Mindoro Fault) and the northern F2 faults (North Verde Fault System and Central Verde Fault System). The newly recognized faults redefine the knowledge of the neotectonic structure of the area but are still consistent with the ongoing east-west extension in southern Luzon and the overall extension in northern Central Philippines. These faults pose seismic hazards, and more studies are needed to determine their seismogenic potential.The authors would like to thank the National Mapping and Resource Information Authority (NAMRIA) for generously providing the multibeam bathymetry data and the Department of Science and Technology - Philippine Institute of Volcanology and Seismology for providing the earthquake catalog. The research party and the ship crew of M/Y Panata of the University of the Philippines Marine Science Institute is also thanked for their assistance in data collection during the research cruise in Verde Island Passage last July 2019. The authors are very much grateful to editor GR and reviewers YL and WF for providing valuable comments that greatly improved this manuscript. Topography data is from JAXA ALOS World 3D–30 m (AW3D30) DEM (https://www.eorc.jaxa.jp/ALOS/en/aw3d30/index.htm) while global bathymetry is from the GEBCO_2020 grid (https://www.gebco.net/data_and_products/gridded_bathymetry_data/). Focal mechanism solutions were obtained from Harvard GCMT (https://www.globalcmt.org/).
- Estimation of the vertical phytoplankton distribution in the Philippine Sea: Influence of turbulence following passage of typhoonsCordero-Bailey, Kristina S.A.; Almo, Aldwin T.; David, Laura T.; Yñiguez, Aletta T. (Elsevier, 2022-11)The subsurface chlorophyll-a maximum (SCM) is a phenomenon that contributes significantly to the total primary production of the open ocean but it is not observable from remote sensing, thus primary production based on satellite information is highly underestimated. In a highly dynamic region such as the Philippine Sea, turbulence caused by tropical storms may exert significant impact on the SCM feature. In this study, we attempt to estimate the vertical phytoplankton profile in the Philippine Sea from remote sensing images by applying a generic quantitative approach. Generalized Additive Models (GAM) followed by Generalized Linear Models (GLMs) were used create predictive equations between response variables (Chl-a profile parameters) and predictor variables (RS parameters). GAM was able to predict integrated Chl-a biomass using photosynthetic active radiation (PAR), wind speed and wind stress, the depth of the Chl-a peak using surface Chl-a, wind speed and wind stress, and the baseline Chl-a concentration using sea surface temperature, sea surface salinity and PAR. GLM found wind stress and wind speed as significant predictors for integrated Chl-a biomass, while surface Chl-a, wind speed and wind stress were significant predictors for depth of the Chl-a peak. When the predictive equations were applied to 2020 monthly satellite images, they were seen to adequately estimate the offshore spatial distribution of the two Chl-a parameters. Increased turbulence due to high wind speed and wind stress during passage of tropical storms was seen to result in shallowing of the SCM and subsequent increase in Chl-a within the water column. These equations could be refined if long-term observational data was available. The capacity to estimate vertical distribution of primary productivity in the Philippines provides a means to better understand fisheries productivity and biogeochemical cycling in the region.
- Complex patterns of genetic structure in the sea cucumber Holothuria (Metriatyla) scabra from the Philippines: implications for aquaculture and fishery managementLal, Monal M.; Macahig, Deo A. S.; Juinio-Meñez, Marie A.; Altamirano, Jon P.; Noran-Baylon, Roselyn; de la Torre-de la Cruz, Margarita; Villamor, Janine L.; Gacura, Jonh Rey L.; Uy, Wilfredo H.; Mira-Honghong, Hanzel; Southgate, Paul C.; Ravago-Gotanco, Rachel (Frontiers Media SA, 2024-06-04)The sandfish Holothuria (Metriatyla) scabra, is a high-value tropical sea cucumber harvested from wild stocks for over four centuries in multi-species fisheries across its Indo-Pacific distribution, for the global bêche-de-mer (BDM) trade. Within Southeast Asia, the Philippines is an important centre of the BDM trade, however overharvesting and largely open fishery management have resulted in declining catch volumes. Sandfish mariculture has been developed to supplement BDM supply and assist restocking efforts; however, it is heavily reliant on wild populations for broodstock supply. Consequently, to inform fishery, mariculture, germplasm and translocation management policies for both wild and captive resources, a high-resolution genomic audit of 16 wild sandfish populations was conducted, employing a proven genotyping-by-sequencing approach for this species (DArTseq). Genomic data (8,266 selectively-neutral and 117 putatively-adaptive SNPs) were used to assess fine-scale genetic structure, diversity, relatedness, population connectivity and local adaptation at both broad (biogeographic region) and local (within-biogeographic region) scales. An independent hydrodynamic particle dispersal model was also used to assess population connectivity. The overall pattern of population differentiation at the country level for H. scabra in the Philippines is complex, with nine genetic stocks and respective management units delineated across 5 biogeographic regions: (1) Celebes Sea, (2) North and (3) South Philippine Seas, (4) South China and Internal Seas and (5) Sulu Sea. Genetic connectivity is highest within proximate marine biogeographic regions (mean Fst=0.016), with greater separation evident between geographically distant sites (Fst range=0.041–0.045). Signatures of local adaptation were detected among six biogeographic regions, with genetic bottlenecks at 5 sites, particularly within historically heavily-exploited locations in the western and central Philippines. Genetic structure is influenced by geographic distance, larval dispersal capacity, species-specific larval development and settlement attributes, variable ocean current-mediated gene flow, source and sink location geography and habitat heterogeneity across the archipelago. Data reported here will inform accurate and sustainable fishery regulation, conservation of genetic diversity, direct broodstock sourcing for mariculture and guide restocking interventions across the Philippines.
- Local tide and geoid corrections significantly improve coastal retracked Jason sea surface heights in the PhilippinesFlores, Paul Caesar; Reyes, Rosalie; Amedo-Repollo, Charina Lyn; Rediang, Abegail; Alfante, Rey Mark; Bauzon, Ma. Divina Angela; Pasaje, Nikki; Bringas, Dennis (Science and Technology Information Institute, 2022-11-08)Retracking algorithms increase the accuracy of coastal sea surface height (SSH) measurements. However, it is still important to validate these retracking estimates with tide gauge (SSHtg) observations. We downloaded the freely available Jason altimeter SSH processed using the XTRACK-ALES algorithm, then detided the SSH using different tide models. The first model is the default tidal correction based on Finite Element Solution 2014 (SSHfes), and the second model is the T_Tide harmonic analysis of the nearest tide gauge (SSHaltimeter). SSHfes showed a very poor correlation (< 0.31) and very high root mean square error (RMSE, > 29 cm). In contrast, SSHaltimeter generally showed a very high correlation (> 0.91) and low RMSE (< 17.4 cm). A further quality check based on the average and standard deviation of the difference between the SSH readings (SSHfes – SSHtg and SSHaltimeter – SSHtg) also showed the superior performance of SSHaltimeter,which scored < 9.3 and < 16.5 cm, respectively; compared to SSHfes, which scored < 9.3 cm and > 27 cm for the same parameters. The poor performance from the SSHfes likely comes from the complex bathymetry and coastal geomorphology of the country, which is not accounted for in the FES. The Philippines generally has a narrow shelf, and the FES tide corrections may be related to deep-water tides rather than the shallow-water tides observed from tide gauges. Despite the high correlation and agreement between the SSHaltimeter and SSHtg, the rate of sea level rise from the SSHaltimeter in some sites is more than twice the rate from SSHtg, which indicates the possible influence of the vertical land movement.This study was supported by grants to R.B. Reyes by the Department of Science and Technology–Philippine Council for Industry, Energy, and Emerging Technology Research and Development through the Coastal Sea Level Rise Philippines Project. We also thank the anonymous reviewers for their feedback on how to improve the manuscript.
- Characteristics of marine heatwaves in the PhilippinesEdullantes, Brisneve; Concolis, Brenna Mei M.; Quilestino-Olario, Raven; Atup, Dale Patrick D.; Cortes, Aiza; Yñiguez, Aletta T. (Elsevier, 2023-09)Marine Heatwaves (MHWs) are prolonged, discrete, and anomalously warm events, which have recently gained global attention due to their far-reaching effects and reported impacts. Although intensive studies have been carried out at global and regional scales, these events remained understudied in the Philippines – a country with high marine biodiversity. The Philippines is highly vulnerable to the impacts of these extreme events as it lies in the western boundary of the Pacific that is considered as a hotspot for MHWs. The present study used multi-year climatic sea surface temperature (SST) record to detect MHWs in the Philippines. The detected events were then characterized using the standardized metrics. Linear trend analysis was conducted to determine the magnitude and direction of the change of the MHW metrics over time. Decadal trend revealed that MHWs in the Philippines significantly increased from seven MHWs in the 1980s to 37 MHWs in the last decade. Moreover, increased duration was remarkable in 2020 with 276 MHW days. MHW frequency and duration were increasing at a rate almost twice as its neighboring waters. Intensities did not significantly increase with time, but the highest SST anomaly is associated with El Niño Southern Oscillation. Furthermore, the eastern and western region of the Philippines is vulnerable to MHWs, but hotspots are mostly confined in the West Philippine Sea and western tropical Pacific. An in-depth investigation of the drivers of MHWs is recommended to understand the physical mechanisms of the development of these extreme thermal events in the Philippine seas. The findings have significant implications for coastal marine resource management, highlighting the need for adaptive management strategies and increased monitoring and research efforts to mitigate the impacts of MHWs on marine ecosystems and local economies in the Philippines.
- Multiple severe storms revealed by coral boulders at Pasuquin, northwestern Luzon, PhilippinesGong, Shou-Yeh; Liu, Sze-Chieh; Siringan, Fernando P.; Gallentes, Adonis; Lin, Han-Wei; Shen, Chuan-Chou (Elsevier, 2022-11-15)Over 30 meter-sized coral boulders are scattered 45–140 m away from the edge and above high tide on a Holocene reef flat at Pasuquin, northwestern Luzon, Philippines. The boulders are overturned or tilted as indicated by the framework fossil corals in them, but have the same lithology as those along the reef edge and thus were likely broken off from there. The dimensions of boulders larger than 3 m were calculated from 3D models constructed by photogrammetry. Their volumes range from 10 to 53 m3. Assuming 2.1 g/cm3 for wet density, weights of boulders would range from 21 to 110 metric tons. Boulders of such size and weight can't be moved by normal waves, and thus must have been dislodged by extreme wave events (EWEs). Small and well-preserved corals found on the surface of seven boulders were collected for 230Th dating to reconstruct the timing of displacement. The ages of corals are 1781.6 ± 1.9, 1903.4 ± 2.7, 1945.8 ± 1.2, 1956.9 ± 1.2, 1956.75 ± 0.99, 1978.1 ± 1.5 and 2002.78 ± 0.88 CE, respectively. These ages are considered to constrain the timing of boulder displacement from the reef edge. We propose that typhoon-induced EWEs were responsible for the displacement of these boulders at Pasuquin.
- Ground deformation analysis caused by post-2013 earthquake in Bohol, PhilippinesBauzon, Ma. Divina Angela I.; Reyes, Rosalie B.; Blanco, Ariel C.; Siringan, Fernando P. (Springer Science and Business Media LLC, 2022-08-16)After the 2013 Mw 7.2 earthquake that occurred in Bohol, the shoreline specifically in Loon and Maribojoc was observed to shift seaward due to ground uplift. This study analyzes the post-earthquake shoreline movement, specifically a 12 km coastal strip in Loon and Maribojoc, and ground deformation of the West Bohol area through Sentinel-1 image processing techniques. From October 2014 to April 2018, the DSAS linear regression shoreline rates were − 4.36 m/yr in Loon and − 1.69 m/yr in Maribojoc, indicative of a landward movement of 91.4% and 88.8% of shoreline transects in Loon and Maribojoc, respectively. PSInSAR revealed varying rates of VLM in the study area from October 2014 to December 2018 such that Loon and Maribojoc exhibit a subsidence rate of − 2 to − 8 mm/yr. The correlation between the shoreline retreat and the land subsidence in the study area is 87%, indicating a possible elastic rebound after the earthquake. The portion of Tagbilaran City on its northern side exhibits land subsidence of − 2 to − 6 mm/yr while its southern side exhibits land uplift of 0–2 mm/yr. The relative sea level fall from TGSL measurements indicates an uplift in the location of the tide gauge in Tagbilaran City.
- Genomics and metabolomics-based assessment of the biosynthetic potential of the sponge-associated microorganism Streptomyces cacaoi strain R2A-843A from the PhilippinesMalto, Zabrina Bernice L.; Reyes, Joeriggo M.; Lo, Bernard Isaiah; Davis, Kevin Bossie S.; Concepcion, Gisela; Salvador-Reyes, Lilibeth A. (Philippine-American Academy of Science and Engineering, 2023-10-20)The biosynthetic machinery of the sponge-associated Streptomyces cacaoi strain R2A-843A was assessed using a combined genomics and metabolomics approach. Whole genome sequencing and molecular networking showed the high biosynthetic potential of this actinomycete. A significant proportion of the genome is dedicated to secondary metabolite production, with biosynthetic gene clusters for nonribosomal peptides, polyketides, and terpenes being the most represented. Seven cyclic pentapeptides, including a putative new analogue, and a glycosylated lanthipeptide were identified using HRMS and untargeted MS/MS analysis. To validate our genome and metabolome analysis, we undertook a mass spectrometry-guided purification and confirmed the production of the known peptides BE-18257A (1) and BE-18257B (2). The production of 1 and 2 and the growth of the microorganism were monitored for eight days. Compound 2 was produced at a higher concentration, starting at 48 h post-incubation. Both compounds were noncytotoxic against colorectal and breast cancer cell lines.The authors acknowledge funding support from the Department of Science and Technology - Philippine Council for Health Research and Development through the Discovery and Development of Health Products - Marine Component Program. Genome sequencing was made possible through the CHEDPCARI IHITM63 Project. We thank Ms. Shalice R. SusanaGuevarra for conducting the bioactivity assay. This work was done under the supervision of the Bureau of Fisheries and Aquatic Resources under Gratuitous Permit No. FBP-0035-10. This is MSI Contribution No. 501.