Journal Articles - UP - MSI
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- Microscopic stages of North Atlantic Laminaria digitata (Phaeophyceae) exhibit trait-dependent thermal adaptation along latitudesSchimpf, Nele M.; Liesner, Daniel; Franke, Kiara; Roleda, Michael Y.; Bartsch, Inka (Frontiers Media SA, 2022-06-17)Kelp forests in the North Atlantic are at risk of decline at their warm temperature distribution margins due to anthropogenic temperature rise and more frequent marine heat waves. To investigate the thermal adaptation of the cold-temperate kelp Laminaria digitata, we sampled six populations, from the Arctic to Brittany (Spitsbergen, Tromsø, Bodø [all Norway], Helgoland [Germany], Roscoff and Quiberon [both France]), across the species’ entire distribution range, spanning 31.5° latitude and 12-13°C difference in mean summer sea surface temperature. We used pooled vegetative gametophytes derived from several sporophytes to approximate the genetic diversity of each location. Gametophytes were exposed to (sub-) lethal high (20-25°C) and (sub-) optimal low (0-15°C) temperature gradients in two full-factorial, common-garden experiments, subjecting subsets of populations from different origins to the same conditions. We assessed survival of gametophytes, their ability to develop microscopic sporophytes, and subsequent growth. We hypothesized that the thermal performance of gametophytes and microscopic sporophytes corresponds to their local long-term thermal history. Integrated gametophyte survival revealed a uniform upper survival temperature (UST) of 24°C among five tested populations (Tromsø to Quiberon). In contrast, following two weeks of thermal priming of gametophytes at 20-22°C, sporophyte formation at 15°C was significantly higher in southern populations (Quiberon and Roscoff) compared to the high-latitude population of Tromsø. Between 0-15°C, survival of the Arctic population (Spitsbergen) was negatively correlated with increasing temperatures, while the southern-most population (Quiberon) showed the opposite. Thus, responses of survival at low, and sporophyte formation at high temperatures, support the concept of local adaption. On the other hand, sporophyte formation between 0-15°C peaked at 6-9°C in the Quiberon and at 9-12°C in the Spitsbergen population. Sporophyte growth rates (GR) both in length and width were similar for Spitsbergen, Tromsø and Quiberon; all had maximum GRs at 12-15°C and low GRs at 0-6°C. Therefore, responses of sporophyte formation and growth at low temperatures do not reflect ecotypic adaptation. We conclude that L. digitata populations display trait-dependent adaptation, partly corresponding to their local temperature histories and partly manifesting uniform or unpredictable responses. This suggests differential selection pressures on the ontogenetic development of kelps such as L. digitata.We would like to thank A. Wagner for the sampling and clonal isolation of kelp material and technical assistance in the laboratory, C. Daniel for support with the image analysis, L. Foqueau for the SST data, C. Gauci for statistical advice and S. DeAmicis for supervision in this BSc Thesis.
- Enrichment of the protein content of the macroalgae Saccharina latissima and Palmaria palmataAasen, Inga Marie; Sandbakken, Ingrid S.; Toldnes, Bendik; Roleda, Michael Y.; Slizyte, Rasa (Elsevier, 2022-06)The large brown seaweeds (kelps) are potential sources of protein for animal feed. They have lower protein contents than most red and green algae, but due to potential for large-scale production, they may represent a significant future protein source. The impact of pH, temperature and polysaccharide-degrading enzymes on the solubility and extraction yields of protein from wet Saccharina latissima biomass was investigated. The protein solubility increased with increasing pH and reached maximum of 23% at pH 11, determined as total amino acids (TAA). The enzyme treatments increased the release of soluble compounds by 30–35%. The highest protein yield obtained was 19%, using a ratio of water to wet seaweed of 1:1 for extraction. Even if the yields can be increased by increasing the water amounts used for extraction, the majority of the protein would remain in the insoluble residue after separation. The strategy for production of a larger quantity of protein-enriched biomass was therefore to maintain the insoluble fraction as the product. A pilot scale production was carried out, also including the red algae Palmaria palmata. In total 750 kg S. latissima and 195 kg P. palmata were processed. The protein content in the product increased from 10 to 20% of dry weight (dw) for S. latissima and from 12 to 28% for P. palmata, with yields of 79 and 69%, respectively. The ash content was reduced from 44 to 26% and from 12 to 5% of dw, respectively, for the two species. The main protein loss was free amino acids, which constituted approximately 10% of TAA in the feedstocks. Less essential than non-essential amino acids were lost, thus, the essential amino acids were enriched in the product.The work was funded by The Research Council of Norway, grant no. 244244.
- Marine macroalgal reference culture collection at the University of the Philippines Marine Science Institute (UP-MMARCC): Status and prospects for advancing Philippine phycologySantiañez, Wilfred John E.; Guerta, Christian Ace T.; Lastimoso, John Michael L. (Assocation of Systematic Biologists in the Philippines, 2022-11-16)Seaweeds research in the Philippines-from studies on their diversity, natural products chemistry, and the utilization of their derivatives-is largely based on spot collections of large and conspicuous components of the seaweed flora found along the coasts. Such efforts are often focused on commercially important seaweeds; thus, most of the smaller and even microscopic seaweeds remain understudied, if not completely overlooked. Consequently, little to none is known on many aspects of the biology, ecology, and even biochemistry of these components of the Philippine seaweed flora. To understand aspects of seaweed biology and serve as a facility for preserving the genetic resources of Philippine seaweeds, we established the Marine Macroalgal Reference Culture Collection at the University of the Philippines Marine Science Institute (UP-MMARCC). We are currently maintaining 446 seaweed strains (or isolates) collected from several coastal and offshore areas in the Philippines, the latter including the Kalayaan Island Group in the West Philippine Sea, and 25 isolates from Okinawa, Japan. To our knowledge, the UP-MMARCC is the most diverse and widely sampled culture collection in the Philippines so far. Moreover, our preliminary molecular-assisted biodiversity studies suggest that UP-MMARCC houses several isolates that are either new records to the Philippines or putative new taxa. We anticipate that with continued support, we will be able to sustain and expand our culture collection, not only to facilitate discoveries but also to cater to the needs of the Philippine seaweed industry and in support of its call for diversifying our seaweed commodities and their products.
- Reproductive phenology and morphology of Macrocystis pyrifera (Laminariales, Ochrophyta) from southern New Zealand in relation to wave exposure1Leal, Pablo P.; Roleda, Michael Y.; Fernández, Pamela A.; Nitschke, Udo; Hurd, Catriona L. (Wiley, 2021-07-23)Macrocystis pyrifera is a major habitat forming kelp in coastal ecosystems of temperate regions of the northern and southern hemispheres. We investigated the seasonal occurrence of adult sporophytes, morphological characteristics, and reproductive phenology at two sites within a wave-protected harbour and two wave-exposed sites in southern New Zealand every 3–4 months between 2012 and 2013. Seasonality in reproduction was assessed via the number of sporophylls, the occurrence of sori on sporophylls, and non-sporophyllous laminae (fertile pneumatocyst-bearing blades and fertile apical scimitars), meiospore release, and germination. We found that M. pyrifera was present and reproductive year-round in three of the four sites, and patterns were similar for the wave-exposure conditions. Sori were found on pneumatocyst-bearing blades and apical scimitars in addition to the sporophylls, and viable meiospores were released from all three types of laminae. Morphological variations between sites with different wave exposure indicate that sporophytes from wave-protected sites have bigger blades and holdfasts and are longer than those from wave-exposed sites. We discuss the implications of these biological variables for the ecology of M. pyrifera inhabiting different wave exposure environments in southern New Zealand.Pablo P. Leal was supported by a scholarship from BECAS CHILE-ANID and by Programa Integral de Desarrollo de Acuicultura de Algas para Pescadores Artesanales (Etapa 4), funded by the Subsecretarıa de Economıa y Empresas de Menor Tamano (Convenio 2016). Michael Y. Roleda acknowledges the Philippine’s Department of Science and Technology (DOST) Balik Scientist Program for the fellowship. Udo Nitschke gratefully acknowledges support by Skidmore College, 815 North Broadway, Saratoga Springs, NY 12866, USA. Pamela A. Fernandez was supported by the Chilean National Commission for Scientific and Technological Research (ANID/FONDECYT; Postdoctoral grant 3170225 and grant 1180647) and ANID/Programa Basal (CeBiB, FB-0001). We are grateful to Rocio Suarez for assisting in field sampling.
- Growth, nitrate uptake kinetics, and biofiltration potential of eucheumatoids with different thallus morphologiesNarvarte, Bienson Ceasar V.; Genovia, Tom Gerald T.; Hinaloc, Lourie Ann R.; Roleda, Michael Y. (Wiley, 2021-12-30)The declining production of commercially important eucheumatoids related to serious problems like increasing susceptibility to ice‐ice disease and epiphytism may be ameliorated by nutrition. This ushered to an increasing interest in incorporating seaweeds into an integrated multi‐trophic aquaculture (IMTA) setup to take up excess inorganic nutrients produced by fish farms for their nourishment. In this regard, it is important to understand the nutrient uptake capacity of candidate seaweeds for incorporation in an IMTA system. Here, we examined the growth, nitrate (NO3‐) uptake kinetics and biofiltration potential of Eucheuma denticulatum and three strains of Kappaphycus alvarezii (G‐O2, TR‐C16 and SW‐13) with distinct thallus morphologies. The NO3‐ uptake rates of the samples were determined under a range of NO3‐ concentration (1‐ 48 µM) and uptake rates were fitted to the Michaelis‐Menten saturation equation. Among the examined eucheumatoids, only SW‐13 had a linear response to NO3‐ concentration while other strains had uptake rates that followed the Michaelis‐Menten saturation equation. Eucheuma denticulatum had the lowest Km (9.78 ± 1.48 µM) while G‐O2 had the highest Vmax (307 ± 79.3 µmol · g‐1 · min‐1). The efficiency in NO3‐ uptake (highest Vmax/Km and α) was translated into the highest growth rate (3.41± 0.58 % · d‐1) measured in E. denticulatum. Our study provided evidence that eucheumatoids could potentially take up large amount of NO3‐ and fix CO2 when cultivated proximate to a fish farm as one component of an IMTA system. During a 45‐d cultivation period of eucheumatoids, as much as 370 g NO3‐ can be sequestered by every 1 kg initial biomass E. denticulatum growing at 3% · d‐1. Furthermore, based on our unpublished photosynthetic measurements, the congeneric K. striatus can fix 27.5 g C · kg‐1 DW during a 12‐h daylight period.
- Manzaea minuta gen. & comb. nov. (Scytosiphonaceae, Phaeophyceae) from the tropical Northwestern Pacific OceanSantiañez, Wilfred John E.; Kogame, Kazuhiro (Philippine Journal of Systematic Biology, 2022-07-11)Recent molecular-assisted taxonomic studies on the brown algal genus Hydroclathrus has resulted in discoveries of new taxa in the family Scytosiphonaceae, both at the genus and species level. However, phylogenetic studies on Hydroclathrus based on wide geographical sampling also suggested that the genus is not monophyletic. That is, one of the recently described species Hydroclathrus minutus is consistently segregated from the Hydroclathrus main clade. We propose here to segregate H. minutus from the brown algal genus Hydroclathrus and establish the new monotypic genus Manzaea (i.e., Manzaea minuta gen. & comb. nov.) based on information on molecular phylogenetics and morpho-anatomy. Morphologically, M. minuta is similar to Hydroclathrus and Tronoella in having clathrate (net-like) and spreading thalli but is differentiated from the latter two genera in having membranous thalli that are sometimes interadhesive resulting in portions of the thallus forming amorphous clumps. Additionally, Manzaea is distinguished from both clathrate genera in having thick-walled medullary cells and short closely arranged quadriseriate plurangia. Phylogenetic analyses (Maximum Likelihood and Bayesian Inference) based on single (plastidial psaA and rbcL genes) and concatenated (cox3 + psaA + rbcL) genes showed that M. minuta is consistently segregated from the highly supported clade of Hydroclathrus species and often clustering with Tronoella and/or Rosenvingea. Our proposal further increases the diversity of monotypic genera in the Scytosiphonaceae and underscores the need to conduct further studies on tropical seaweed biodiversity.WJES thanks Dr. Gavino C. Trono, Jr. and Dr. Edna T. Ganzon-Fortes for the inspiration and encouragement to conduct seaweed biodiversity and systematics research. WJES is funded by the University of the Philippines through the Balik PhD Program of the Office of the Vice President for Academic Affairs (OVPAA-BPhD-2018-05), the University of the Philippines Diliman through the In-house research grant of the Marine Science Institute, and the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of the Government of Japan under the Monbukagakusho Scholarship Grant. WJES also acknowledges the support of the Department of Science and Technology (DOST)-Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (PCAARRD) of the Government of the Philippines through the DOST Balik Scientist Program.
- The complete mitochondrial genome of a wild-collected Kappaphycus malesianus (Solieriaceae, Rhodophyta)Crisostomo, Bea A.; Dumilag, Richard V.; Roleda, Michael Y.; Lluisma, Arturo O. (Taylor & Francis, 2023-03-04)Kappaphycus malesianus is a red seaweed farmed primarily for its carrageenan, a polysaccharide important in the food and pharmaceutical industries. Among the commercially cultivated Kappaphycus species, only K. malesianus has no mitogenome data available. Here, we assembled the mitochondrial genome of K. malesianus from next-generation sequencing data. The circular mitogenome consisted of 25,250 base pairs (bp) with a GC content of 30.25%. These values were comparable to previously sequenced solieriacean mitogenomes. Structural features, such as the stem-loop and hairpin, which were previously reported in other rhodophytes mitochondrial DNA, were also identified. The annotated genes (24 protein-coding genes, 24 tRNA genes, and 2 rRNA genes) were arranged in an order similar to the other available solieriacean mitogenomes. Lastly, phylogenetic analysis using 23 predicted protein domains showed the sister relationship of K. malesianus with other Kappaphycus species.The authors are grateful to Z.-Z. Aguinaldo, S. Damsik, and J. Turong for aiding during laboratory and field works. The authors also acknowledge the LGU of Sitangkai, Tawi-Tawi for granting permission for the collection activities. This is contribution no. 495 from the University of the Philippines the Marine Science Institute (UPMSI), Diliman, Quezon City.
- Sargassum sp. juice as an early juvenile supplemental feed for Stichopus cf. horrensIbañez, Glaiza; Cabanayan-Soy, Rona; Baure, Jerwin; Juinio-Meñez, Marie Antonette (Springer, 2022-09-28)The development of an efficient and low-cost feed is important to reduce the production and maintenance costs of microalgae. In this study, two experiments were conducted to evaluate the feasibility of using Sargassum sp. juice (SARG) to boost the growth and survival of post-settled Stichopus cf. horrens juveniles. Experiment 1 tested whether SARG improves growth compared with live microalgae diets, Chaetoceros calcitrans (Cc), combined Cc and Navicula ramosissima (Nr), and an unfed treatment. Experiment 2 determined the best SARG concentration—high feeding regime (HFR; 1 mL ind−1), medium (MFR; 0.5 mL ind−1), or low (LFR; 0.25 ml ind−1), relative to live microalgae Chaetoceros muelleri (CM). Juveniles in both experiments were reared for 30 days. In Experiment 1, the average daily growth rate (DGRL) of juveniles in SARG (0.04 ± 0.01 cm d−1) was the highest although not significantly different from Cc and Cc + Nr, but was significantly higher than the control. In Experiment 2, DGRL at day 14 in HFR (− 0.02 ± 0.02 cm d−1) was significantly lower than LFR (0.01 ± 0.01 cm d−1) and MFR (0.02 ± 0.02 cm d−1). Survival was higher in all SARG treatments compared with CM, while a significant decrease in feeding activity was observed in HFR by day 30. Results indicate that concentrations of 0.25–0.5 mL SARG per juvenile can boost growth and be an alternate diet for post-settled juveniles during early rearing. However, SARG alone is not sufficient to maintain growth beyond 3 weeks. With SARG feed supplementation and water quality management, the scaling-up of juvenile production of this emergent culture species can be accelerated.Our sincere gratitude to Mr. Tirso Catbagan and Mr. Garry Bucol for their assistance in the set-up of the experiments. We also thank Ms. Rose Angeli Rioja and Ms. JayR Gorospe for providing inputs to improve this paper. We also thank the Sea cucumber Research Team and the staff of the University of the Philippines—Marine Science Institute, Bolinao Marine Laboratory for their support and assistance during the conduct of the study.
- Genetic diversity of Kappaphycus malesianus (Solieriaceae, Rhodophyta) from the PhilippinesDumilag, Richard V.; Crisostomo, Bea A.; Aguinaldo, Zae-Zae A.; Lluisma, Arturo O.; Gachon, Claire M.M.; Roleda, Michael Y. (Elsevier, 2023-07)Kappaphycus farming for carrageenan production is characterized by a strong selective pressure at the genetic level. Traits of agronomic importance are compromised due to domestication bottlenecks and the subsequent events of possible selective breeding of founding cultivars. Kappaphycus malesianus is farmed in Malaysia and the Philippines, and is distributed within the Malesian region. While the majority of genetically characterized specimens of this species are from Malaysia, those from the Philippines are poorly explored. Here, we assessed the genetic diversity of K. malesianus from the Philippines based on cox1 sequences. Of the 15 identified haplotypes, 14 specimens represent three novel haplotypes (wild specimens) that form a group distinct from the main clade comprising most K. malesianus haplotypes known to date. An additional haplotype from a cultivated specimen was identical to that of the most widely distributed haplotype. Our findings demonstrate that the K. malesianus is genetically more diverse than previously recognized. It is expected that higher genetic diversity may be revealed through additional sampling from a wider geographic range and careful application of integrative approaches. Future selective breeding programs in Kappaphycus would benefit from the incorporation of the genetic resources, as provided in this study.
- Impacts of aquaculture nutrient sources: ammonium uptake of commercially important eucheumatoids depends on phosphate levelsNarvarte, Bienson Ceasar V.; Hinaloc, Lourie Ann R.; Gonzaga, Shienna Mae C.; Roleda, Michael Y. (Springer, 2023-09-14)In an integrated multitrophic aquaculture (IMTA) system, seaweeds serve as extractive species that utilize excess nutrients, thereby reducing the risk of eutrophication and promoting sustainable aquaculture. However, the use of excessive fish feeds and the resultant faecal waste as nutrient streams can contribute to variations in nitrogen and phosphorus levels (e.g., primarily NH4+ and PO4−3) in the surrounding area and this may impact the physiology of the integrated seaweeds, particularly on how these species take up inorganic nutrients. In this study, the effect of different PO4−3 levels on NH4+ uptake of the three commercially important eucheumatoids Kappaphycus alvarezii, Kappaphycus striatus and Eucheuma denticulatum was examined under laboratory conditions. Seaweed thalli (n = 4) were incubated in seawater media containing 30 µM NH4+, and 0, 0.5, 1.0, 1.5, 3.0 or 5.0 µM PO4−3 for 1 h under a saturating light level of 116 ± 7.13 µmol photons m−2 s−1 inside a temperature-controlled laboratory. Species-specific responses to PO4−3 levels were observed. For K. alvarezii, maximum NH4+ uptake (17.8 ± 1.6 µmol gDW−1 h−1) was observed at 0.5 µM PO4−3 and the uptake rate declined at higher PO4−3 levels. For K. striatus, NH4+ uptake increased with increasing PO4−3 levels, with maximum N uptake (6.35 ± 0.9 µmol gDW−1 h−1) observed at 5.0 µM PO4−3. For E. denticulatum, maximum NH4+ uptake (14.6 ± 1.4 µmol gDW−1 h−1) was observed at 1.0 µM PO4−3. Our results suggest that among the three eucheumatoid species, the NH4+ uptake of K. striatus persists even at high levels of PO4−3. However, our results also showed that K. striatus had the lowest range of NH4+ uptake rates. These results should be taken into consideration when incorporating eucheumatoids in the IMTA system, where PO4−3levels significantly vary in space and time.This is contribution no. 500 from the Marine Science Institute, University of the Philippines (UPMSI), Diliman. The AlgaE Team would like to thank the Bolinao Marine Laboratory (BML) for providing the venue to conduct our experiments. BCV Narvarte and MY Roleda acknowledge the Sea6 Energy Pvt. Ltd. for sponsorship during the 24th International Seaweed Symposium (ISS) held on February 19-24, 2023, at Hobart, Tasmania, Australia. Likewise, BCV Narvarte and LAR Hinaloc would like to thank the University of the Philippines- Office of the International Linkages (UP-OIL) for providing them with a travel grant to attend the aforementioned symposium. BCV Narvarte also acknowledges the Department of Science and Technology- Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development (DOST-PCAARRD) for his PhD Scholarship (GREAT- Graduate Research and Education Assistantship for Technology Program).