Journal Articles - UP - MSI
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- The case for restoration of tropical coastal ecosystemsYap, Helen T. (Elsevier BV, 2000-01)At no time have humans so altered their natural environment than the present. Marine ecosystems have not been spared, and the degradation of coastal habitats has reached severe proportions in many parts of the world. The mere setting aside of areas for protection may not be enough to ensure adequate production and provision of services for a growing global human population. Hence, the active restoration of habitats, in addition to protection and preservation, is probably the more desirable conservation strategy. Accumulated experience over several decades has demonstrated that the rehabilitation or even restoration of damaged coastal ecosystems is feasible. However, the degree of difficulty and expense involved vary, with coral reefs being the most complicated habitats to restore, followed by seagrass beds and then mangrove forests. In ecosystem restoration, a comprehensive strategy based on sound biological and ecological principles, and proven techniques must be developed. A concrete, achievable goal must be articulated. Because of the dynamic nature of ecosystems, and the inability to accurately predict pathways of succession after a community is established through artificial means, subsequent modifications to a project must proceed within a flexible framework of adaptive management. Finally, for restoration efforts to be successful, local communities must participate actively in cooperation with local governments in accordance with the principle of co-management.
- Predicting fish kills and toxic blooms in an intensive mariculture site in the Philippines using a machine learning modelYñiguez, Aletta T.; Ottong, Zheina J. (Elsevier BV, 2020-03)Harmful algal blooms (HABs) that produce toxins and those that lead to fish kills are global problems that appear to be increasing in frequency and expanding in area. One way to help mitigate their impacts on people's health and livelihoods is to develop early-warning systems. Models to predict and manage HABs typically make use of complex multi-model structures incorporating satellite imagery and frequent monitoring data with different levels of detail into hydrodynamic models. These relatively more sophisticated methods are not necessarily applicable in countries like the Philippines. Empirical statistical models can be simpler alternatives that have also been successful for HAB forecasting of toxic blooms. Here, we present the use of the random forest, a machine learning algorithm, to develop an early-warning system for the prediction of two different types of HABs: fish kill and toxic bloom occurrences in Bolinao-Anda, Philippines, using data that can be obtained from in situ sensors. This site features intensive and extensive mariculture activities, as well as a long history of HABs. Data on temperature, salinity, dissolved oxygen, pH and chlorophyll from 2015 to 2017 were analyzed together with shellfish ban and fish kill occurrences. The random forest algorithm performed well: the fish kill and toxic bloom models were 96.1% and 97.8% accurate in predicting fish kill and shellfish ban occurrences, respectively. For both models, the most important predictive variable was a decrease in dissolved oxygen. Fish kills were more likely during higher salinity and temperature levels, whereas the toxic blooms occurred more at relatively lower salinity and higher chlorophyll conditions. This demonstrates a step towards integrating information from data that can be obtained through real-time sensors into a an early-warning system for two different types of HABs. Further testing of these models through times and different areas are recommended.
- Perceived global increase in algal blooms is attributable to intensified monitoring and emerging bloom impactsHallegraeff, Gustaaf M.; Anderson, Donald M.; Belin, Catherine; Bottein, Marie-Yasmine Dechraoui; Bresnan, Eileen; Chinain, Mireille; Enevoldsen, Henrik; Iwataki, Mitsunori; Karlson, Bengt; McKenzie, Cynthia H.; Sunesen, Inés; Pitcher, Grant C.; Provoost, Pieter; Richardson, Anthony; Schweibold, Laura; Tester, Patricia A.; Trainer, Vera L.; Yñiguez, Aletta T.; Zingone, Adriana (Springer, 2021-06-08)Global trends in the occurrence, toxicity and risk posed by harmful algal blooms to natural systems, human health and coastal economies are poorly constrained, but are widely thought to be increasing due to climate change and nutrient pollution. Here, we conduct a statistical analysis on a global dataset extracted from the Harmful Algae Event Database and Ocean Biodiversity Information System for the period 1985–2018 to investigate temporal trends in the frequency and distribution of marine harmful algal blooms. We find no uniform global trend in the number of harmful algal events and their distribution over time, once data were adjusted for regional variations in monitoring effort. Varying and contrasting regional trends were driven by differences in bloom species, type and emergent impacts. Our findings suggest that intensified monitoring efforts associated with increased aquaculture production are responsible for the perceived increase in harmful algae events and that there is no empirical support for broad statements regarding increasing global trends. Instead, trends need to be considered regionally and at the species level.
- Quantifying vertical land motion at tide gauge sites using permanent scatterer interferometric synthetic aperture radar and global navigation satellite system solutionsReyes, Rosalie; Bauzon, Ma. Divina Angela; Pasaje, Nikki Alen; Alfante, Rey Mark; De Lara, Pocholo Miguel; Ordillano, Marion; Flores, Paul Caesar; Rediang, Abegail; Nota, Patrick Anthony; Siringan, Fernando; Blanco, Ariel; Bringas, Dennis (Springer, 2022-01-29)One of the consequences of climate change is sea level rise (SLR). Near the coast SLR varies at different locations due to the contributions from regional/local climatic and non-climatic factors. Vertical land motion (VLM) can affect the accuracy of sea level observations from tide gauges (TG) that may exacerbate coastal area inundation/flooding. This study investigated the viability of Permanent Scatterer Interferometric Synthetic Aperture Radar (PSInSAR) to quantify the rate of VLM at the TG sites. Measurements from TG co-located GNSS receivers provide the actual VLM rates and ground truth for PSInSAR-derived rates. Based on the results from the 9 study sites, almost all except one are subsiding. Both PSInSAR and GNSS solutions showed the same trend with rates that correlate at 0.89. Analysis from 20 Active GNSS stations showed 95% of the sites are undergoing land subsidence. This should be a cause of concern for communities near the coastal areas.
- A unique reproductive strategy in the mushroom coral Fungia fungitesEyal-Shaham, Lee; Eyal, Gal; Ben-Zvi, Or; Sakai, Kazuhiko; Harii, Saki; Sinniger, Frederic; Hirose, Mamiko; Cabaitan, Patrick; Bronstein, Omri; Feldman, Bar; Shlesinger, Tom; Levy, Oren; Loya, Yossi (Springer Science and Business Media LLC, 2020-09-30)The vast majority of scleractinian corals are either simultaneous hermaphrodites or gonochoric. Exceptions to these are rare. Nevertheless, species belonging to the family Fungiidae are known to exhibit a wide variety of reproductive strategies. We examined the reproductive ecology of the mushroom coral Fungia fungites in Okinawa. Our study was conducted as part of a long-term, wide-ranging project (2009–2010 and 2013–2017) which explored the unique reproductive strategies of several species belonging to the family Fungiidae. Here we report the co-occurrence of males, females, and hermaphrodite individuals in a long-term monitored population of the reproductively atypical brooder coral F. fungites within the family Fungiidae. F. fungites status as a single-polyped solitary coral, was used to perform manipulative experiments to determine the degree of dependence of an individual coral on its conspecific neighbors for reproduction, and examined whether a constant sperm supply is obligatory for the continuous production of planulae. Isolated females of F. fungites exhibited a distinctive reproductive strategy, expressed in continuously releasing planulae also in the absence of males. Observations conducted on a daily basis for 2.5 months (throughout the reproductive season of 2015) revealed that some of these individuals released planulae continuously, often between tens and hundreds every day. In an effort to explain this phenomenon, three hypotheses are discussed: (1) Self-fertilization; (2) Asexual production of planulae (i.e., parthenogenetic larvae); and (3) Extended storage of sperm. Finally, we emphasize the importance of continuous and long-term monitoring of studies of coral reproduction; through further genetic studies of coral populations representing a broad range of species and their larval origin.
- Tolerance of Fucus vesiculosus exposed to diesel water-accommodated fraction (WAF) and degradation of hydrocarbons by the associated bacteriaRyzhik, Inna; Pugovkin, Dmitriy; Makarov, Mikhail; Roleda, Michael Y.; Basova, Larisa; Voskoboynikov, Grigoriy (Elsevier BV, 2019-11)The viability and physiological state of brown macroalgae Fucus vesiculosus and its associated epiphytic bacteria exposed to diesel water-accommodated fraction (WAF), as well as the capacity of this association to deplete petroleum hydrocarbons (HCs) were experimentally tested. After a 6-day exposure treatment, the algal-surface associated bacteria were identified as primarily hydrocarbon-oxidising bacteria (HOB), and the algal-HOB association was able to deplete petroleum hydrocarbons from the diesel WAF by 80%. The HOB density on the algal surface exposed to diesel WAF was 350% higher compared to the control (i.e. HOB density on the algal surface exposed to ambient seawater), which suggest that they actively proliferated in the presence of hydrocarbons and most likely consumed hydrocarbons as their primary organic substrate. Exposure to diesel WAF did not affect the metabolic activity of F. vesiculosus. Higher lipid peroxidation was observed in F. vesiculosus exposed to diesel WAF while catalase concentration decreased only during the first day of exposure. Results suggest F. vesiculosus is tolerant to oil pollution and the algal-HOB association can efficiently deplete petroleum hydrocarbons in oil-contaminated seas.
- Are Pyrodinium blooms in the Southeast Asian region recurring and spreading? A view at the end of the millenniumAzanza, Rhodora V.; Max Taylor, F. J. R. (Royal Swedish Academy of Sciences, 2001-09)Pyrodinium bahamense (var. compressum) has been the only dinoflagellate species that has caused major public health and economic problems in the Southeast Asian region for more than 2 decades now. It produces saxitoxin, a suite of toxins that cause Paralytic Shellfish Poisoning (PSP). A serious toxicological problem affecting many countries of the world, mild cases of this poisoning can occur within 30 minutes while in extreme cases, death through respiratory paralysis may occur within 2–24 hrs of ingestion of intoxicated shellfish. Blooms of the organism have been reported in Malaysia, Brunei Darussalam, the Philippines and Indonesia. The ASEAN-Canada Red Tide Network has recorded 31 blooms of the organism in 26 areas since 1976 when it first occurred in Sabah, Malaysia. As of 1999, the most hard hit country has been the Philippines which has the greatest number of areas affected (18) and highest number of Paralytic Shellfish Poisoning (PSP) cases (about 1995). Malaysia has reported a total of 609 PSP cases and 44 deaths while Brunei has recorded 14 PSP cases and no fatalities. Indonesia, on the other hand has a record of 427 PSP cases and 17 deaths. Studies on ecological/environmental impacts of these blooms have not been done in the region. Estimates of economic impacts have shown that the loss could be up to USD 300 000 day−1. Most of the data and information useful for understanding Pyrodinium bloom dynamics have come from harmful/toxic algal monitoring and research that have developed to different degrees in the various countries in the region affected by the organism's bloom. Regional collaborative research and monitoring efforts can help harmonize local data sets and ensure their quality and availability for comparative analysis and modeling. Temporal patterns of the blooms at local and regional scales and possible signals and trends in the occurrence/recurrence and spread of Pyrodinium blooms could be investigated. Existing descriptive and simple predictive models of Pyrodinium blooms can be improved and refined to help in the management of the wild harvest and aquaculture of shellfish in a region where the people are dependent on these resources for their daily food sustainance and livelihood.
- Changes in community structure and biomass of seagrass communities along gradients of siltation in SE AsiaTerrados, J.; Duarte, C. M.; Fortes, M. D.; Borum, J.; Agawin, N.; Bach, S.; Thampanya, U.; Kamp-Nielsen, L.; Kenworthy, W. J.; Geertz-Hansen, O.; Vermaat, J. (Elsevier BV, 1998-05)The patterns of change in species richness and biomass of Southeast Asian seagrass communities along siltation gradients were compared at different sites in The Philippines and Thailand. Seagrass species richness and community leaf biomass declined sharply when the silt and clay content of the sediment exceeded 15%. Syringodium isoetifolium and Cymodocea rotundata were present only in multispecific meadows, while Enhalus acoroides was the only species remaining in heavily silted sediments. The following ranking of species sensitivity to siltation is proposed (from the least to most sensitive): S. isoetifolium→C. rotundata→Thalassia hemprichii→Cymodocea serrulata→Halodule uninervis→Halophila ovalis→Enhalus acoroides. Positive correlations were found between species richness and both community leaf biomass and the leaf biomass of individual seagrass species. The increase in community biomass with increasing species richness was associated with a more even distribution of the leaf biomass among seagrass species. The relationships between percent silt and clay in the sediment and seagrass community leaf biomass and species richness provide useful dose–response relationships which can be used to set allowable or threshold siltation loads in SE Asian coastal waters, and indicate that species loss from seagrass meadows is an early warning of detrimental siltation loads.
- Bacterial community assembly, succession, and metabolic function during outdoor cultivation of Microchloropsis salinaMorris, Megan M.; Kimbrel, Jeffrey A.; Geng, Haifeng; Tran-Gyamfi, Mary Bao; Yu, Eizadora T.; Sale, Kenneth L.; Lane, Todd W.; Mayali, Xavier (American Society for Microbiology, 2022-08-31)
Outdoor cultivation of microalgae has promising potential for renewable bioenergy, but there is a knowledge gap on the structure and function of the algal microbiome that coinhabits these ecosystems. Here, we describe the assembly mechanisms, taxonomic structure, and metabolic potential of bacteria associated with Microchloropsis salina cultivated outdoors. Open mesocosms were inoculated with algal cultures that were either free of bacteria or coincubated with one of two different strains of alga-associated bacteria and were sampled across five time points taken over multiple harvesting rounds of a 40-day experiment. Using quantitative analyses of metagenome-assembled genomes (MAGs), we tracked bacterial community compositional abundance and taxon-specific functional capacity involved in algal-bacterial interactions. One of the inoculated bacteria (Alteromonas sp.) persisted and dispersed across mesocosms, whereas the other inoculated strain (Phaeobacter gallaeciensis) disappeared by day 17 while a taxonomically similar but functionally distinct Phaeobacter strain became established. The inoculated strains were less abundant than 6 numerically dominant newly recruited taxa with functional capacities for mutualistic or saprophytic lifestyles, suggesting a generalist approach to persistence. This includes a highly abundant unclassified Rhodobacteraceae species that fluctuated between 25% and 77% of the total community. Overall, we did not find evidence for priority effects exerted by the distinct inoculum conditions; all mesocosms converged with similar microbial community compositions by the end of the experiment. Instead, we infer that the 15 total populations were retained due to host selection, as they showed high metabolic potential for algal-bacterial interactions such as recycling alga-produced carbon and nitrogen and production of vitamins and secondary metabolites associated with algal growth and senescence, including B vitamins, tropodithietic acid, and roseobacticides.
IMPORTANCE Bacteria proliferate in nutrient-rich aquatic environments, including engineered algal biofuel systems, where they remineralize photosynthates, exchange secondary metabolites with algae, and can influence system output of biomass or oil. Despite this, knowledge on the microbial ecology of algal cultivation systems is lacking, and the subject is worthy of investigation. Here, we used metagenomics to characterize the metabolic capacities of the predominant bacteria associated with the biofuel-relevant microalga Microchloropsis salina and to predict testable metabolic interactions between algae and manipulated communities of bacteria. We identified a previously undescribed and uncultivated organism that dominated the community. Collectively, the microbial community may interact with the alga in cultivation via exchange of secondary metabolites which could affect algal success, which we demonstrate as a possible outcome from controlled experiments with metabolically analogous isolates. These findings address the scalability of lab-based algal-bacterial interactions through to cultivation systems and more broadly provide a framework for empirical testing of genome-based metabolic predictions.
- MPA-FishMApp – a citizen science app that simplifies monitoring of coral reef fish density and biomass in marine protected areasAbesamis, Rene; Balingit, Rodel; de Castro, Romulo; Aguila, Raphael Nelo; Cabiguin, Maryjune; Villagracia, Julius; Susmeña, Marynoll; Montemar, Mario Neil; Yocor, Antonio (National Fisheries Research and Development Institute, 2022-12)Monitoring changes in fish density and biomass inside marine protected areas (MPAs) through fish visual census (FVC) can determine if MPAs are achieving their goal of promoting fish population recovery. Simplified FVC methods have been developed for citizen scientists to enable them to monitor fish populations in MPAs. However, MPA monitoring programs led by local stakeholders remain rare and difficult to sustain due to technical barriers related to FVC data management. Here, we describe and evaluate a novel online app called MPA-FishMApp, which we developed to help stakeholders of MPAs that protect coral reefs in the Philippines efficiently store, analyze, and visualize FVC data. MPA-FishMApp is coupled to a simplified FVC method wherein the observer records only 21 reef fish species groups during surveys. The app provides a simple data entry interface, cloud storage, and algorithms to estimate fish density and biomass. Spatial and temporal trends in fish density and biomass can be instantaneously visualized in the app based on relative importance to fisheries. Field testing suggested that the MPA-FishMApp methodology (simplified FVC and app) is sensitive enough to detect qualitative patterns showing differences in density and biomass that may develop between MPAs and fished sites, especially in fishes that are highly important to fisheries. However, users must have sufficient training and experience in simplified FVC to produce reliable data. MPA-FishMApp may help reverse the lack of monitoring in MPAs across the Philippines and offers an accessible, transparent, and auditable venue for collaboration between citizen scientists and professional scientists.