Journal Articles - UP - MSI
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- Predicting fish kills and toxic blooms in an intensive mariculture site in the Philippines using a machine learning modelYñiguez, Aletta T.; Ottong, Zheina J. (Elsevier BV, 2020-03)Harmful algal blooms (HABs) that produce toxins and those that lead to fish kills are global problems that appear to be increasing in frequency and expanding in area. One way to help mitigate their impacts on people's health and livelihoods is to develop early-warning systems. Models to predict and manage HABs typically make use of complex multi-model structures incorporating satellite imagery and frequent monitoring data with different levels of detail into hydrodynamic models. These relatively more sophisticated methods are not necessarily applicable in countries like the Philippines. Empirical statistical models can be simpler alternatives that have also been successful for HAB forecasting of toxic blooms. Here, we present the use of the random forest, a machine learning algorithm, to develop an early-warning system for the prediction of two different types of HABs: fish kill and toxic bloom occurrences in Bolinao-Anda, Philippines, using data that can be obtained from in situ sensors. This site features intensive and extensive mariculture activities, as well as a long history of HABs. Data on temperature, salinity, dissolved oxygen, pH and chlorophyll from 2015 to 2017 were analyzed together with shellfish ban and fish kill occurrences. The random forest algorithm performed well: the fish kill and toxic bloom models were 96.1% and 97.8% accurate in predicting fish kill and shellfish ban occurrences, respectively. For both models, the most important predictive variable was a decrease in dissolved oxygen. Fish kills were more likely during higher salinity and temperature levels, whereas the toxic blooms occurred more at relatively lower salinity and higher chlorophyll conditions. This demonstrates a step towards integrating information from data that can be obtained through real-time sensors into a an early-warning system for two different types of HABs. Further testing of these models through times and different areas are recommended.
- Perceived global increase in algal blooms is attributable to intensified monitoring and emerging bloom impactsHallegraeff, Gustaaf M.; Anderson, Donald M.; Belin, Catherine; Bottein, Marie-Yasmine Dechraoui; Bresnan, Eileen; Chinain, Mireille; Enevoldsen, Henrik; Iwataki, Mitsunori; Karlson, Bengt; McKenzie, Cynthia H.; Sunesen, Inés; Pitcher, Grant C.; Provoost, Pieter; Richardson, Anthony; Schweibold, Laura; Tester, Patricia A.; Trainer, Vera L.; Yñiguez, Aletta T.; Zingone, Adriana (Springer, 2021-06-08)Global trends in the occurrence, toxicity and risk posed by harmful algal blooms to natural systems, human health and coastal economies are poorly constrained, but are widely thought to be increasing due to climate change and nutrient pollution. Here, we conduct a statistical analysis on a global dataset extracted from the Harmful Algae Event Database and Ocean Biodiversity Information System for the period 1985–2018 to investigate temporal trends in the frequency and distribution of marine harmful algal blooms. We find no uniform global trend in the number of harmful algal events and their distribution over time, once data were adjusted for regional variations in monitoring effort. Varying and contrasting regional trends were driven by differences in bloom species, type and emergent impacts. Our findings suggest that intensified monitoring efforts associated with increased aquaculture production are responsible for the perceived increase in harmful algae events and that there is no empirical support for broad statements regarding increasing global trends. Instead, trends need to be considered regionally and at the species level.
- Insights into the environmental conditions contributing to variability in the larval recruitment of the tropical sardine Sardinella lemuruPata, Patrick R.; Yñiguez, Aletta T.; Deauna, Josephine Dianne L.; De Guzman, Asuncion B.; Jimenez, Cesaria R.; Rosario, Roselle T. Borja-Del; Villanoy, Cesar L. (Elsevier, 2021-07)The small pelagic fishery in the southern Philippines is one of the largest contributors to fisheries production in the country, and is dominated by the Bali sardine Sardinella lemuru. This species is a year-round spawner that has its peak spawning period during the northeast monsoon (NEM) months of November to February. However, there is still limited information on the conditions that affect this species’ survival during its early life history stages. Here, we attempt to discern the importance of temperature, prey density and advection on sardine larvae. The larvae were represented as passive particles that were released in known spawning grounds to simulate dispersal. The conditions the larvae experienced, namely, temperature and estimated prey density based on satellite chlorophyll-a values were recorded at each time step until the estimated recruitment age of 60 days. The temporal and spatial averaged conditions of recruited sardines showed that sardines spawned during the NEM months experienced higher chlorophyll-a, lower (more optimal) sea surface temperature, albeit higher advective loss, than sardines spawned during other months. Comparisons between years showed that during higher reported catch years, sardine larvae experienced lower temperatures and higher retention nearshore. Our results emphasize that sardine stock management efforts need to recognize the contribution of the temporally variable sardine environment to patterns in sardine recruitment and consequently in catches.The authors would like to thank Dr. Wilfredo Campos, Luke Felix, Dr. Rio Naguit, Denmark Recamara, and the Research for Sardines Volunteer Program (RSVP) volunteers for sharing sardine fisheries data; Arjay Cayetano for helping start the model used; and Iris Salud Bollozos for useful insights on larval ecology. This study was fully funded by the Department of Science and Technology–Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (DOSTPCAARRD) under the program, “Development of robust tools for managing sardine fisheries in the Philippines: Zamboanga Upwelling Bohol Sea System Program.” The authors declare no conflict of interest.
- Characterizing the vertical phytoplankton distribution in the Philippine Sea off the northeastern coast of LuzonCordero-Bailey, Kristina; Bollozos, Iris Salud F.; Palermo, Joseph Dominic H.; Silvano, Kathleen M.; Escobar, Ma. Teresa L.; Jacinto, Gil S.; San Diego-McGlone, Maria Lourdes; David, Laura T.; Yñiguez, Aletta T. (Elsevier BV, 2021-06)The vertical distribution of phytoplankton in the open ocean shows an increase in biomass at a depth referred to as the Subsurface Chlorophyll Maximum (SCM) that contributes significantly to the primary production of the water column. Hence, it is important to understand the dynamics that lead its formation and maintenance. This study examines the SCM in the Philippine Sea off the northeast coast of Luzon, utilizing bio-optical and empirical phytoplankton data from two oceanographic cruises conducted northeast of the island of Luzon in May/June 2011 and April/May 2012. Chlorophyll (Chl) profiles were converted to smoothed chlorophyll functions by using a b-spline basis. In 2011, the mean SCM depth was 97.24 m ± 22.33 m with mean SCM concentration of 0.43 μg/L ± 0.09 μg/L while in 2012, mean SCM was deeper at 115.45 m ± 24.25 m and mean SCM concentration of 0.31 ± 0.09 μg/L. Functional principal component analysis showed that the first principal component (PC) explained variability in the SCM depth, the second PC showed variability in the magnitude of the SCM concentration while the third PC accounted for the presence of multiple peaks. K-means clustering using the principal components resulted in three clusters which represented the offshore stations with the deepest SCM, stations within an observed cyclonic eddy with intermediate SCM and stations with coastal and shelf waters showing shallow SCM. Correlation analyses between Chl and physico-chemical and bio-optical parameters showed that Chl was positively correlated to beam attenuation, a bio-optical property that has been used as an alternative proxy for phytoplankton. This suggests that the observed SCMs represent actual increase in phytoplankton biomass. When the influence of the Kuroshio recirculation gyre was dominant in 2011, cooler temperature in surface waters was seen to significantly increase surface Chl. In 2012, highly saline waters from the tropical North Equatorial Current (NEC) waters appeared to lower the Chl distribution, particularly at the SCM. Phytoplankton abundance was recorded to be higher at the SCM than the surface in both years. In 2011, different species of diatoms dominated all clusters, except at the SCM of the coastal and shelf cluster wherein the dinoflagellate Gyrodinium grossestriatum was dominant. Most dominant species from 2011 were conspicuously absent in 2012 and there was a shift to the diatoms Fragilariopsis (surface), Thalassiosira and Rhizosolenia spp. in all clusters. These provide new insights on the phytoplankton community in relation to the changes in the oceanic circulation from subtropical North Pacific water in 2011 to tropical NEC water in 2012.This work is Marine Science Institute contribution number 482. We would like to acknowledge Dr. Cesar Villanoy and Dr. Olivia Cabrera and the anonymous reviewers who provided invaluable inputs for the development and improvement of the paper.
- The harmful raphidophyte Chattonella (Raphidophyceae) in Western Pacific: Its red tides and associated fisheries damage over the past 50 years (1969–2019)Lum, Wai Mun; Benico, Garry; Doan-Nhu, Hai; Furio, Elsa; Leaw, Chui Pin; Leong, Sandric Chee Yew; Lim, Po Teen; Lim, Weol Ae; Lirdwitayaprasit, Thaithaworn; Lu, Songhui; Nguyen, Nguyen Van; Orlova, Tatiana Yu.; Rachman, Arief; Sakamoto, Setsuko; Takahashi, Kazuya; Teng, Sing Tung; Thoha, Hikmah; Wang, Pengbin; Yñiguez, Aletta T.; Wakita, Kazumi; Iwataki, Mitsunori (Elsevier, 2021-07)Red tides and associated fisheries damage caused by the harmful raphidophyte Chattonella were reassessed based on the documented local records for 50 years to understand the distribution and economic impacts of the harmful species in the Western Pacific. Blooms of Chattonella with fisheries damage have been recorded in East Asia since 1969, whereas they have been only recorded in Southeast Asia since the 1980s. Occurrences of Chattonella have been documented from six Southeast Asian countries, Indonesia, Malaysia, Philippines, Singapore, Thailand and Viet Nam, with mass mortalities mainly of farmed shrimp in 1980–1990s, and farmed fish in 2000–2010s. These occurrences have been reported with the names of C. antiqua, C. marina, C. ovata, C. subsalsa and Chattonella sp., owing to the difficulty of microscopic species identification, and many were not supported with molecular data. To determine the distribution of C. marina complex and C. subsalsa in Southeast Asia, molecular phylogeny and microscopic observation were also carried out for cultures obtained from Indonesia, Malaysia, Japan, Philippines, Russia, Singapore and Thailand. The results revealed that only the genotype of C. marina complex has been detected from East Asia (China, Japan, Korea and Russia), whereas both C. marina complex (Indonesia and Malaysia) and C. subsalsa (Philippines, Singapore and Thailand) were found in Southeast Asia. Ejection of mucocysts has been recognized as a diagnostic character of C. subsalsa, but it was also observed in our cultures of C. marina isolated from Indonesia, Malaysia, Japan, and Russia. Meanwhile, the co-occurrences of the two harmful Chattonella species in Southeast Asia, which are difficult to distinguish solely based on their morphology, suggest the importance of molecular identification of Chattonella genotypes for further understanding of their distribution and negative impacts.We thank Drs Yuuki Kosaka, Winnie Lik Sing Lau, Ing Kuo Law and Toh Hii Tan for their sampling assistances. We thank Dr. Sadaaki Yoshimatsu for providing a culture strain TAI-93, and Drs Mineo Yamaguchi and Haruo Yamaguchi for support on maintenance and rDNA analysis of the culture. This work was carried out under international collaboration of the IOC/WESTPAC-HAB project and Core-to-Core Program (B. Asia-Africa Science Platforms) of the Japan Society for the Promotion of Science (JSPS). This work was partially supported by Japanese JSPS Kakenhi 19H03027 and 19KK0160 (MI), Malaysian MOHE HICOE IOES and FRGS (PTL), Vietnamese VAST NVCC17.02/21-21 (HD-N), and the Japanese Fund-in-Trust (MEXT).
- Nearshore to offshore trends in plankton assemblage and stable isotopes in reefs of the West Philippine SeaYñiguez, Aletta T.; Apego, Gianina Cassandra May; Mendoza, Norman; Gomez, Norchel Corcia; Jacinto, Gil S. (Frontiers Media SA, 2022-01-25)Coral reefs are typified by their benthic components, and reef diversity and productivity are traditionally ascribed to the symbiotic association between corals and zooxanthellae, and other macroalgal forms. Less understood is the role of plankton and adjacent pelagic areas in contributing to reef productivity. Half of the reef benthos are filter or particle feeders, while a significant proportion of reef fishes are planktivorous. These organisms can serve as bridges between adjacent oceanic areas to the reef proper, and the pelagic and benthic realm. Here, we investigate the plankton trophic dynamics in two reef systems in the West Philippine Sea. Physico-chemical data, phytoplankton and mesozooplankton samples were collected from stations spanning offshore to reef areas per site. These were subjected to microscopic and stable isotope analysis to determine variability in plankton distribution, phytoplankton and zooplankton interactions, and gain insights into the trophic dynamics and productivity of reefs. Results showed distinct variations in plankton biomass and assemblage from offshore to reef areas, as well as between the reef systems. Phytoplankton distributions pointed toward filtering out of cells across the fore reef and reef flat areas, while mesozooplankton distributions could be mediated more by other factors. Isotopic signatures of δ13C and δ15N indicated the influence of different nutrient sources for phytoplankton and that mesozooplankton relied only partly on phytoplankton for food in most areas of the reefs. The mesozooplankton likely also obtain food from other sources such as the microbial and detrital pathways. More in-depth spatio-temporal studies on these bentho-pelagic interactions are recommended, which can provide more robust estimates of the trophic dynamics of these reefs that are situated in important fishing grounds and key biodiversity areas.We thank Cesar Villanoy and the Physical Oceanography laboratory for organizing the research cruise, the Philippine Navy and the BRP Gregorio Velasquez (AGR 702) for the help in sample collection during the research expedition conducted in the Kalayaan Group of Islands in 2017. We also thank the Department of Science and Technology – Philippine Nuclear Research Institute for the collaboration in conducting the stable isotope analyses, John Kristoffer Q. Andres for identifying the zooplankton samples, and John Michael N. Aguilar for analyzing the samples for chemical parameters.
- Connections and clustering of Paralytic Shellfish Toxin events among coastal embayments in an archipelago partly mediated by advectionPunongbayan, Andalus T.; Wang, Ysabel D.; Villanoy, Cesar L.; Yñiguez, Aletta T. (Elsevier, 2022-01)The potential for advection to influence harmful algal bloom (HAB) spread in adjacent embayments and islands has not been investigated in the Philippines as previous studies have focused on HAB dynamics within specific embayments. Advection of HABs may be relevant in the Samar-Leyte region where adjacent sites are subject to recurrent blooms of Pyrodinium bahamense. We used different analyses to extract the potential role of advection in blooms in the region. First, we used Bayesian and information theoretic approaches applied to historical data on shellfish bans to quantify spatial dependencies in HAB occurrences between sites. Then, to determine whether such dependencies are related to circulation patterns in the region, we analyzed connectivity using a hydrodynamic model coupled with a conservative tracer-based HAB model. The Bayesian network showed that in 7 out of 11 sites, the probability of a shellfish ban depended on the state of an adjacent site. Site pairs with direct dependence relations also shared relatively high similarity in HAB occurrences over time. In the modelled network, bans tend to occur sequentially, spreading from a few sites with relatively high probabilities for ban events. A subset of sites (sources) were found to be informative of future HAB event probabilities in other sites (destinations) over time lags that are generally longer the farther the destination. Modelled surface advection showed high connectivity strengths between sources and destinations associated with circulation features, e.g., an anticyclonic current in Leyte, wind-driven coastal current in western Samar, and tidally-driven flow in the shallow embayments in southwest Samar. High connectivities were correlated with direct dependence relations in the Bayesian network. Connectivity explained up to about 1/3 of the variance in statistical dependencies between ban signals. Our results show that Paralytic Shellfish Toxin events within this region can be due to advection of blooms originating from nearby areas rather than localized cyst dynamics within an embayment. Particular sites were also identified as potential indicator sites within spatial clusters for monitoring since they are typically where blooms originate and spread from.
- The harmful unarmored Dinoflagellate Karlodinium in Japan and Philippines, with reference to ultrastructure and micropredation of Karlodinium azanzae sp. nov. (Kareniaceae, Dinophyceae)1Benico, Garry; Takahashi, Kazuya; Lum, Wai Mun; Yñiguez, Aletta T.; Iwataki, Mitsunori (Phycological Society of America, 2020)Twenty-six cultures of the harmful marine dinoflagellate Karlodinium, isolated from Japanese and Philippine coastal waters, were examined using LM, SEM, and molecular phylogeny inferred from ITS and LSU rDNA. Seven Karlodinium species (six from Japan and four from Philippines), K. australe, K. ballantinum, K. decipiens, K. gentienii, K. veneficum, K. zhouanum, and a novel species Karlodinium azanzae sp. nov., were identified based on their morphology and phylogenetic positions.Karlodinium azanzae from Manila Bay, Philippines was further characterized by TEM, HPLC (chloroplast pigment), and bioassay on brine shrimp and other marine zooplankton. Cells of K. azanzae were the largest (mean 25.3 µm long) in Karlodinium, possessed numerous tiny reflective particles, starch grains, and lipid granules, and usually swam at the bottom of the culture vessel. The straight apical structure complex and a ventral pore were common to the genus. The longitudinally elongated nucleus was located at the center, and the yellowish chloroplasts contained an embedded pyrenoid and carotenoid pigments typical of the genus (i.e., fucoxanthin as major carotenoid with its derivatives). TEM revealed a part of the flagellar apparatus, of which the long striated ventral connective is the first report in the Kareniaceae. Phylogenetic trees showed closest affinity of K. azanzae with K. australe and K. armiger. The new species could be differentiated from related species by cell size, position of the nucleus, and characteristic swimming behavior. Lethality of K. azanzae to large zooplankton and micropredation using a developed peduncle was also observed.
- Thecal tabulation, body scale morphology and phylogeny of Heterocapsa philippinensis sp. nov. (Peridiniales, Dinophyceae) from the PhilippinesBenico, Garry; Lum, Wai Mun; Takahashi, Kazuya; Yñiguez, Aletta T.; Iwataki, Mitsunori (Elsevier, 2021-08)The thecal tabulation and body scale structure of the marine armoured dinoflagellate Heterocapsa, isolated from Philippines, were examined using LM, SEM and TEM, and its phylogenetic position was inferred from ITS and LSU rDNA sequences. Cells were ovoid and the plate tabulation (Po, cp, X, 5′, 3a, 7′′, 6c, 5s, 5′′′, 2′′′′) was consistent with most Heterocapsa species. The second anterior intercalary plate (2a) had a circular pattern with a thick marginal border free of pores. The nucleus was longitudinally elongated and curved, and located at the dorsal side of the cell. Discoid lobes of brownish chloroplast were peripherally distributed, and a pyrenoid was positioned at the centre. The triradiate body scales, measuring 250–300 nm in diameter, consisted of a roundish basal plate with six radiating ridges, nine peripheral uprights/spines, and three radiating spines. These components were identical to those of H. pseudotriquetra and H. steinii, except for the roundish outline of basal plate. Molecular phylogeny showed that the species clustered with H. pseudotriquetra and H. steinii. This species was differentiated from all other Heterocapsa species in the sausage-shaped nucleus and circular pattern on the 2a plate. This study proposed a novel species Heterocapsa philippinensis sp. nov. for the isolate.
- Spatial planning insights for Philippine coral reef conservation using larval connectivity networksPata, Patrick R.; Yñiguez, Aletta T. (Frontiers Media SA, 2021-10-06)The marine habitats of the Philippines are recognized to be some of the most biodiverse systems globally yet only 1.7% of its seas are designated as marine protected areas (MPAs) with varying levels of implementation. Many of these MPAs were established based on local-scale conservation and fisheries objectives without considering larger-scale ecological connections. The connectivity of reefs through larval dispersal is important in the regional-scale resilience against anthropogenic disturbances and is considered a significant criterion in planning for MPAs. In this study, we provide insights into the delineation of ecologically connected MPA networks using larval dispersal modeling and network analysis. We characterized the network properties of the Philippine coral reefs, organized as 252 reef nodes, based on the larval connectivity networks of a branching coral, sea urchin, and grouper. We then evaluated the distribution of the existing 1,060 MPAs relative to the connectivity patterns. All reef nodes were found to be highly interconnected with a mean shortest path ranging from 1.96 to 4.06. Reef nodes were then ranked according to their relative importance in regional connectivity based on five connectivity indices. Despite the between-organism and between-index variability in rankings, there were reefs nodes, mostly located offshore and at major straits, which consistently ranked high. We found that the distribution of existing MPAs partially capture some of the regional connectivity functions but there is a spatial mismatch between the primarily coastal MPAs and the high-ranking reef nodes. Furthermore, network partitioning identified subnetworks and dispersal barriers. The existing MPAs were found to be disproportionately distributed to a few subnetworks and that the largest subnetworks do not contain the greatest number of MPAs. Considering these gaps, we suggest expanding the coverage of protected areas especially in underrepresented reef networks to meaningfully capture national-scale connectivity and meet global conservation objectives.We would like to thank Dr. Vera Horigue and Andrew Torres for constructive comments and suggestions during the early versions of this paper. We also thank the members of the Biological Oceanography and Modeling of Ecosystems (BiOME) Laboratory who assisted in running model simulations.