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Journal Articles - UP - MSI

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Author: search.filters.author.Crisostomo, Bea A.

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    The complete mitochondrial genome of a wild-collected Kappaphycus malesianus (Solieriaceae, Rhodophyta)
    Crisostomo, Bea A.; Dumilag, Richard V.; Roleda, Michael Y.; Lluisma, Arturo O. (Taylor & Francis, 2023-03-04)
    Kappaphycus malesianus is a red seaweed farmed primarily for its carrageenan, a polysaccharide important in the food and pharmaceutical industries. Among the commercially cultivated Kappaphycus species, only K. malesianus has no mitogenome data available. Here, we assembled the mitochondrial genome of K. malesianus from next-generation sequencing data. The circular mitogenome consisted of 25,250 base pairs (bp) with a GC content of 30.25%. These values were comparable to previously sequenced solieriacean mitogenomes. Structural features, such as the stem-loop and hairpin, which were previously reported in other rhodophytes mitochondrial DNA, were also identified. The annotated genes (24 protein-coding genes, 24 tRNA genes, and 2 rRNA genes) were arranged in an order similar to the other available solieriacean mitogenomes. Lastly, phylogenetic analysis using 23 predicted protein domains showed the sister relationship of K. malesianus with other Kappaphycus species.
    The authors are grateful to Z.-Z. Aguinaldo, S. Damsik, and J. Turong for aiding during laboratory and field works. The authors also acknowledge the LGU of Sitangkai, Tawi-Tawi for granting permission for the collection activities. This is contribution no. 495 from the University of the Philippines the Marine Science Institute (UPMSI), Diliman, Quezon City.
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    Genetic diversity of Kappaphycus malesianus (Solieriaceae, Rhodophyta) from the Philippines
    Dumilag, Richard V.; Crisostomo, Bea A.; Aguinaldo, Zae-Zae A.; Lluisma, Arturo O.; Gachon, Claire M.M.; Roleda, Michael Y. (Elsevier, 2023-07)
    Kappaphycus farming for carrageenan production is characterized by a strong selective pressure at the genetic level. Traits of agronomic importance are compromised due to domestication bottlenecks and the subsequent events of possible selective breeding of founding cultivars. Kappaphycus malesianus is farmed in Malaysia and the Philippines, and is distributed within the Malesian region. While the majority of genetically characterized specimens of this species are from Malaysia, those from the Philippines are poorly explored. Here, we assessed the genetic diversity of K. malesianus from the Philippines based on cox1 sequences. Of the 15 identified haplotypes, 14 specimens represent three novel haplotypes (wild specimens) that form a group distinct from the main clade comprising most K. malesianus haplotypes known to date. An additional haplotype from a cultivated specimen was identical to that of the most widely distributed haplotype. Our findings demonstrate that the K. malesianus is genetically more diverse than previously recognized. It is expected that higher genetic diversity may be revealed through additional sampling from a wider geographic range and careful application of integrative approaches. Future selective breeding programs in Kappaphycus would benefit from the incorporation of the genetic resources, as provided in this study.
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    Nitrate and phosphate uptake of morphologically distinct calcified macroalgae
    Narvarte, Bienson Ceasar V.; Hinaloc, Lourie Ann R.; Gonzaga, Shienna Mae C.; Crisostomo, Bea A.; Genovia, Tom Gerald T.; Roleda, Michael Y. (Informa UK Limited, 2023-05-02)
    Calcified macroalgae are essential components of marine ecosystem, yet much of their physiology remains to be understood. Here, the nutrient (NO3– and PO4–3) uptake physiologies of two branched macroalgae, Actinotrichia fragilis (Nemaliophycidae) and Amphiroa fragilissima (Corallinophycidae), and the non-geniculate rhodolith Sporolithon sp. (Corallinophycidae) were examined. Sporolithon sp. had the lowest uptake rate through time and the three calcified macroalgae had a surge in NO3– and PO4–3 uptake that occurred between 3 and 20 min, with a maximum uptake at 3 min, after which the nutrient uptake rates declined. The NO3– uptake of the three calcified macroalgae followed Michaelis-Menten kinetics. For NO3– uptake, Sporolithon sp. had the lowest Km (2.72 ± 0.97 µM), Vmax (0.08 ± 0.01 µmol gDW–1 h–1), Vmax/Km (0.05 ± 0.03 µmol gDW–1 h–1 µM−1) and α (0.01 ± 0.00 µmol gDW–1 h–1 µM−1), while A. fragilis had the highest Km (12.35 ± 0.71 µM) and Vmax (6.41 ± 0.23 µmol gDW–1 h–1), and A. fragilissima had the highest Vmax/Km (1.52 ± 0.26 µmol gDW–1 h–1 µM−1) and α (0.37 ± 0.01 µmol gDW–1 h–1 µM−1). Moreover, the PO4–3 uptake rate of the three species was faster at higher PO4–3 levels. These differences in species-specific nutrient uptake traits are likely caused by differences in morphology. These traits are important for survival and proliferation of this group of marine organisms, particularly in a nutrient-variable environment.
    This is contribution no. 494 from the University of the Philippines – the Marine Science Institute, (UP-MSI). We thank our laboratory aides Jerry Arboleda, Guillermo Valenzuela and Robert Valenzuela for their help in our sample collection. We also thank the UPMSI-Bolinao Marine Laboratory for providing us with the venue where we conducted our experiment and laboratory analyses. MYR acknowledges the Department of Science and Technology (DOST) Balik Scientist Program (BSP) fellowship.