Journal Articles - UP - MSI
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- Marine macroalgal reference culture collection at the University of the Philippines Marine Science Institute (UP-MMARCC): Status and prospects for advancing Philippine phycologySantiañez, Wilfred John E.; Guerta, Christian Ace T.; Lastimoso, John Michael L. (Assocation of Systematic Biologists in the Philippines, 2022-11-16)Seaweeds research in the Philippines-from studies on their diversity, natural products chemistry, and the utilization of their derivatives-is largely based on spot collections of large and conspicuous components of the seaweed flora found along the coasts. Such efforts are often focused on commercially important seaweeds; thus, most of the smaller and even microscopic seaweeds remain understudied, if not completely overlooked. Consequently, little to none is known on many aspects of the biology, ecology, and even biochemistry of these components of the Philippine seaweed flora. To understand aspects of seaweed biology and serve as a facility for preserving the genetic resources of Philippine seaweeds, we established the Marine Macroalgal Reference Culture Collection at the University of the Philippines Marine Science Institute (UP-MMARCC). We are currently maintaining 446 seaweed strains (or isolates) collected from several coastal and offshore areas in the Philippines, the latter including the Kalayaan Island Group in the West Philippine Sea, and 25 isolates from Okinawa, Japan. To our knowledge, the UP-MMARCC is the most diverse and widely sampled culture collection in the Philippines so far. Moreover, our preliminary molecular-assisted biodiversity studies suggest that UP-MMARCC houses several isolates that are either new records to the Philippines or putative new taxa. We anticipate that with continued support, we will be able to sustain and expand our culture collection, not only to facilitate discoveries but also to cater to the needs of the Philippine seaweed industry and in support of its call for diversifying our seaweed commodities and their products.
- Laboratory and field growth studies of commercial strains of Eucheuma denticulatum and Kappaphycus alvarezii in the PhilippinesDawes, Clinton J.; Lluisma, A. O.; Trono, G. C. (Springer, 1994-02)Daily growth rates of 0.1 to 8.4% d-1 for the brown form and 0.2 to 6.3% d-1 of the green form were measured for 3 to 5-cm long branches of the tropical red seaweed Kappaphycus alvarezii cultured in the laboratory. Highest growth rates were found using inexpensive enrichments such as soil water and coconut water supplemented with 0.7 mM N and 13 µM P and with a liquid fertilizer, Algafer, produced from seaweeds in the Philippines. Laboratory grown branches of both K. alvarezii and Eucheuma denticulatum transplanted to rafts in the field showed daily growth rates of 4.4 to 8.9% d-1, as high or higher than other reported growth rates. The studies, carried out in the Philippines, demonstrate the viability and high yield of laboratory cultivars and methods to keep laboratory culture costs low.
- Differences in biomass production and carrageenan yields among four strains of farmed carrageenophytes in Northern Bohol, PhilippinesTrono, Gavino C.; Lluisma, Arturo O. (Springer, 1992-11)Comparative studies on the biomass and carrageenan production of two strains of Eucheuma denticulatum and two strains of Kappaphycus alvarezii were made to assess the seasonality in their production capacities. The high and similar refined carrageenan (RC) yields (43–53% of dry wt.) of the four strains in the first cropping season (June–October) coincided with their high biomass production with plants averaging from 1.1 to 1.8 kg each at harvest. The poor RC yields (21–33%) recorded in the second cropping (October–February) coincided with their season of low biomass (av. wt: 0.34 to 1.0 kg). The four strains, however, recorded contrasting performance in the third cropping season (February–July) with the two E. denticulatum strains recording high RC yields (43 and 42.5%) together with high biomass (av. wt: 1.5 and 1.6 kg) in contrast to the low RC yields (30 and 39%) and low biomass (av. wt. 0.21 and 0.28 kg) of the two K. alvarezii strains. Records for semi-refined carrageenan (SRC) yields in the second and third cropping seasons were quite consistent and similar for the four strains (42–55%), except in the second cropping where the two K. alvarezii strains recorded low SRC. These differences in production potentials highlight the need for cropping management of the four strains to improve their cropping performance.
- The complete mitochondrial genome of a wild-collected Kappaphycus malesianus (Solieriaceae, Rhodophyta)Crisostomo, Bea A.; Dumilag, Richard V.; Roleda, Michael Y.; Lluisma, Arturo O. (Taylor & Francis, 2023-03-04)Kappaphycus malesianus is a red seaweed farmed primarily for its carrageenan, a polysaccharide important in the food and pharmaceutical industries. Among the commercially cultivated Kappaphycus species, only K. malesianus has no mitogenome data available. Here, we assembled the mitochondrial genome of K. malesianus from next-generation sequencing data. The circular mitogenome consisted of 25,250 base pairs (bp) with a GC content of 30.25%. These values were comparable to previously sequenced solieriacean mitogenomes. Structural features, such as the stem-loop and hairpin, which were previously reported in other rhodophytes mitochondrial DNA, were also identified. The annotated genes (24 protein-coding genes, 24 tRNA genes, and 2 rRNA genes) were arranged in an order similar to the other available solieriacean mitogenomes. Lastly, phylogenetic analysis using 23 predicted protein domains showed the sister relationship of K. malesianus with other Kappaphycus species.The authors are grateful to Z.-Z. Aguinaldo, S. Damsik, and J. Turong for aiding during laboratory and field works. The authors also acknowledge the LGU of Sitangkai, Tawi-Tawi for granting permission for the collection activities. This is contribution no. 495 from the University of the Philippines the Marine Science Institute (UPMSI), Diliman, Quezon City.
- Clonal propagation of Eucheuma denticulatum and Kappaphycus alvarezii for Philippine seaweed farmsDawes, C. J.; Trono, G. C.; Lluisma, A. O. (Springer, 1993-06)Technique improvement and cost reduction of branch culture, micropropagation, and callus production of carrageenan-yielding seaweeds Kappaphycus alvarezii and Eucheuma denticulatum is presented. Low cost branch culture is possible by enriching seawater with 0.1% coconut water with 1 mg l−1 indole-3-butyric acid for 24 h wk−1 or continuous culture with 0.01% Algafer, a Philippine fertilizer. Micropropagation of 0.5 cm explants had almost 100% new branch production demonstrating the viability of callus regenerated plants. The use of carrageenan as a media for callus production was not effective when compared to agar. Propagules of both species, transferred from the University of the Philippine Marine Science Institute (UPMSI) culture facility to the field, showed daily percent growth rates of 5 to 5.5% d−1 over 84 days. Based on the costs of the UPMSI laboratory, a culture facility in the seaweed farming area is estimated to cost about U. S. $22000 during the initial year and 58% less the second year.
- Genetic diversity of Kappaphycus malesianus (Solieriaceae, Rhodophyta) from the PhilippinesDumilag, Richard V.; Crisostomo, Bea A.; Aguinaldo, Zae-Zae A.; Lluisma, Arturo O.; Gachon, Claire M.M.; Roleda, Michael Y. (Elsevier, 2023-07)Kappaphycus farming for carrageenan production is characterized by a strong selective pressure at the genetic level. Traits of agronomic importance are compromised due to domestication bottlenecks and the subsequent events of possible selective breeding of founding cultivars. Kappaphycus malesianus is farmed in Malaysia and the Philippines, and is distributed within the Malesian region. While the majority of genetically characterized specimens of this species are from Malaysia, those from the Philippines are poorly explored. Here, we assessed the genetic diversity of K. malesianus from the Philippines based on cox1 sequences. Of the 15 identified haplotypes, 14 specimens represent three novel haplotypes (wild specimens) that form a group distinct from the main clade comprising most K. malesianus haplotypes known to date. An additional haplotype from a cultivated specimen was identical to that of the most widely distributed haplotype. Our findings demonstrate that the K. malesianus is genetically more diverse than previously recognized. It is expected that higher genetic diversity may be revealed through additional sampling from a wider geographic range and careful application of integrative approaches. Future selective breeding programs in Kappaphycus would benefit from the incorporation of the genetic resources, as provided in this study.
- The farmed Eucheuma species (Gigartinales, Rhodophyta) in Danajon Reef, Philippines: Carrageenan propertiesAzanza-Corrales, R.; Sa-a, P. (Springer, 1990-09)Six cultured ‘strains’ of Eucheuma denticulatum and E. alvarezii, from which stocks can be selected for the development of a Eucheuma ‘seedling bank’, were tested for their carrageenan quality from June to November 1988. Percent yield of all the varieties taken together was apparently higher in June, becoming lower in November (regression, r −0.785, probability, p ⩽ 0.001). Stepwise regression analysis was done to determine the existence of any relationship between any of the following parameters: gel strength, viscosity, sulfate content, month of sampling, and yield, whether taken individually or in combination. Results show variations of the yield with the month of sampling. ANOVA was performed to test whether there are differences in sulfate levels, gel strength, and viscosity between the Eucheuma alvarezii morphotypes. There was no significant difference between the green and the brown types.
- Impacts of aquaculture nutrient sources: ammonium uptake of commercially important eucheumatoids depends on phosphate levelsNarvarte, Bienson Ceasar V.; Hinaloc, Lourie Ann R.; Gonzaga, Shienna Mae C.; Roleda, Michael Y. (Springer, 2023-09-14)In an integrated multitrophic aquaculture (IMTA) system, seaweeds serve as extractive species that utilize excess nutrients, thereby reducing the risk of eutrophication and promoting sustainable aquaculture. However, the use of excessive fish feeds and the resultant faecal waste as nutrient streams can contribute to variations in nitrogen and phosphorus levels (e.g., primarily NH4+ and PO4−3) in the surrounding area and this may impact the physiology of the integrated seaweeds, particularly on how these species take up inorganic nutrients. In this study, the effect of different PO4−3 levels on NH4+ uptake of the three commercially important eucheumatoids Kappaphycus alvarezii, Kappaphycus striatus and Eucheuma denticulatum was examined under laboratory conditions. Seaweed thalli (n = 4) were incubated in seawater media containing 30 µM NH4+, and 0, 0.5, 1.0, 1.5, 3.0 or 5.0 µM PO4−3 for 1 h under a saturating light level of 116 ± 7.13 µmol photons m−2 s−1 inside a temperature-controlled laboratory. Species-specific responses to PO4−3 levels were observed. For K. alvarezii, maximum NH4+ uptake (17.8 ± 1.6 µmol gDW−1 h−1) was observed at 0.5 µM PO4−3 and the uptake rate declined at higher PO4−3 levels. For K. striatus, NH4+ uptake increased with increasing PO4−3 levels, with maximum N uptake (6.35 ± 0.9 µmol gDW−1 h−1) observed at 5.0 µM PO4−3. For E. denticulatum, maximum NH4+ uptake (14.6 ± 1.4 µmol gDW−1 h−1) was observed at 1.0 µM PO4−3. Our results suggest that among the three eucheumatoid species, the NH4+ uptake of K. striatus persists even at high levels of PO4−3. However, our results also showed that K. striatus had the lowest range of NH4+ uptake rates. These results should be taken into consideration when incorporating eucheumatoids in the IMTA system, where PO4−3levels significantly vary in space and time.This is contribution no. 500 from the Marine Science Institute, University of the Philippines (UPMSI), Diliman. The AlgaE Team would like to thank the Bolinao Marine Laboratory (BML) for providing the venue to conduct our experiments. BCV Narvarte and MY Roleda acknowledge the Sea6 Energy Pvt. Ltd. for sponsorship during the 24th International Seaweed Symposium (ISS) held on February 19-24, 2023, at Hobart, Tasmania, Australia. Likewise, BCV Narvarte and LAR Hinaloc would like to thank the University of the Philippines- Office of the International Linkages (UP-OIL) for providing them with a travel grant to attend the aforementioned symposium. BCV Narvarte also acknowledges the Department of Science and Technology- Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development (DOST-PCAARRD) for his PhD Scholarship (GREAT- Graduate Research and Education Assistantship for Technology Program).
- Reproduction in Eucheuma denticulatum (Burman) Collins and Hervey and Kappaphycus alvarezii (Doty) Doty farmed in Danajon Reef, PhilippinesAzanza-Corrales, Rhodora; Mamauag, Samuel S.; Alfiler, E.; Orolfo, M. J. (Elsevier, 1992-04)Occurrence of reproductive structures in seven forms belonging to two species of carrageenophytes, Eucheuma denticulatum and Kappaphycus alvarezii was determined at a farming site at Danajon Reef, Northern Bohol, Philippines during 1987 and 1988. Reproductive plants of these forms were encountered throughout the study period although not all three structures (asexual or tetrasporic form and sexual male and female forms) were represented in each form. For K. alvarezii forms, taking the ‘browns’ (EAB1 and EAB2) and the ‘greens’ (EAG1 and EAG2) collectively, male and female reproductive structures were found throughout the year but no tetrasporic thalli were encountered. Only male and tetrasporic structures were observed for E. denticulatum (EDB and EDG) while the ‘sacul type’ ( EAG3 ) had both structures present throughout the study period. Analysis of variance revealed significant difference (P < 0.05) in the frequencies of reproductive structures of each form.
- The farmed Euchema species in Danajon Reef, Philippines: Vegetative and reproductive structuresAzanza-Corrales, R. (Springer, 1990-03)As part of the information needed for applied research on hybridization of these economically important species, the vegetative and reproductive structures of Eucheuma denticulatum (Burman) Collins and Hervey, and Eucheuma alvarezii Doty being farmed in Danajon Reef, were studied. All cultured ‘strains’ suspected to have developed from original stocks apparently introduced into the area about twelve years ago were sampled monthly from February 1987 to November 1988. Analyses of fresh free-hand and plastic embedded sections revealed the sexual (male, female) and asexual (tetrasporic) structures in E. alvarezii var.tambalang Doty and the absence of the female in E. denticulatum, indicating the suitability of the former species for future manipulative experiments.