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National Committee on Marine Sciences (NCMS)

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    Initiatives in Philippine Coastal Management: An Overview
    Uychiaoco, A. J.; Alino, P. M.; Dantis, A. L. (Informa UK Limited, 2000-01)
    Standardized and free-format questionnaires on the state of coastal management were fielded to coastal management practitioners during three workshops and a national feedback and recommendation workshop. The most commonly cited responses were identified for each of 13 political regions and overall trends were identified. Management frameworks frequently included research, community organizing, education, livelihood, resource enhancement, resource protection, regulation, and networking components. Gender issues, documentation, and infrastructure investment were rare. The most commonly perceived environmental problem was illegal/ destructive fishing and its associated overfishing and low fish catch. The most commonly cited socioeconomic problem was the inadequacy of law enforcement. The best monitored variables were usually those related to environmental management: status and change of habitats, resources, and degree of enforcement/patrolling activities. The most common nonregulatory enhancement, aside from environmental education (which is the most popular), was mangrove reforestation. In terms of regulations, the majority of the respondents have reportedly formulated an integrated coastal management plan. In practice, regulating destructive and illegal fishing practices and then the establishment of fish sanctuaries are the next most implemented. The most popular quality-of-life enhancement strategies focused on the improvement of sustainable fishing as a livelihood and on a variety of supplementary livelihoods. The most usual institutional intervention being implemented was the setting up of local community people's organizations. Major factors which may influence success or failure of coastal management and recommendations on research, community organizing and livelihood, legislation and policies, implementation and coordination, and networking are also summarized.
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    Individual and interactive effects of ocean warming and acidification on adult Favites colemani
    Tañedo, Mikhael Clotilde S.; Villanueva, Ronald D.; Torres, Andrew F.; Ravago-Gotanco, Rachel; San Diego-McGlone, Maria Lourdes (Frontiers Media SA, 2021-09-09)
    Tropical coral reefs are threatened by local-scale stressors that are exacerbated by global ocean warming and acidification from the post-industrial increase of atmospheric CO2 levels. Despite their observed decline in the past four decades, little is known on how Philippine coral reefs will respond to ocean warming and acidification. This study explored individual and synergistic effects of present-day (pH 8.0, 28°C) and near-future (pH 7.7, 32°C) scenarios of ocean temperature and pH on the adult Favites colemani, a common massive reef-building coral in Bolinao-Anda, Philippines. Changes in seawater temperature drive the physiological responses of F. colemani, whereas changes in pH create an additive effect on survival, growth, and photosynthetic efficiency. Under near-future scenarios, F. colemani showed sustained photosynthetic competency despite the decline in growth rate and zooxanthellae density. F. colemani exhibited specificity with the Cladocopium clade C3u. This coral experienced lower growth rates but survived projected near-future ocean warming and acidification scenarios. Its pH-thermal stress threshold is possibly a consequence of acclimation and adaptation to local environmental conditions and past bleaching events. This research highlights the importance of examining the susceptibility and resilience of Philippine corals to climate-driven stressors for future conservation and restoration efforts in the changing ocean.
    We are grateful to the Marine Biogeochemistry Laboratory and Bolinao Marine Laboratory of the Marine Science Institute, University of the Philippines for the valuable logistical and laboratory support provided. We would also like to thank Drs. Haruko Kurihara, Atsushi Watanabe, and Toshihiro Miyajima for the design of the mass flow controller used in the experiments. This is UP-MSI contribution number 484.
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    A synthesis and review of historical eruptions at Taal Volcano, Southern Luzon, Philippines
    Delos Reyes, Perla J.; Bornas, Ma. Antonia V.; Dominey-Howes, Dale; Pidlaoan, Abigail C.; Magill, Christina R.; Solidum, Renato Jr. U. (Elsevier BV, 2018-02)
    The Philippines is an area of persistent volcanism, being located in one of the most tectonically active regions in the world. Taal Volcano in Southern Luzon is the second most frequently erupting volcano of the 24 active volcanoes in the Philippines. A comprehensive and critical review of published and unpublished references describing the 33 known historical eruptions of Taal may provide answers to knowledge gaps on past eruptive behavior, processes, and products that could be utilized for hazard and risk assessment of future eruptions. Data on the prehistoric eruptions and evolution of Taal Caldera and subsequent deposits are limited. Only four caldera-forming events were identified based on four mapped ignimbrite deposits. From oldest to youngest, these are the silicic Alitagtag (ALI) and Caloocan (CAL) Pumice Flow deposits, the dacitic Sambong Ignimbrite (SAM), and the basaltic-andesitic Taal Scoria Flow, renamed Scoria Pyroclastic Flow (SFL). Except for SFL with 14C dating yielding 5380 ± 70 to 6830 ± 80 ky, there are no age constraints or estimates of extent for the three older deposits. A comprehensive review of the historical eruptions of Taal Volcano is the central element of this paper and includes all eruptions from AD1572 (the first known historic event) to AD1977. Eruption styles and the interplay between processes and products for each eruption are reinterpreted based on the narrative descriptions from all available accounts. A change of classification of eruption styles and eruptive products is undertaken for some events. At least nine reported eruptions were deemed uncertain including the AD1605-AD1611 event (more likely seismic swarms), the AD1634, AD1635, and AD1645 (may simply be solfataric or hydrothermal activity) events, and the AD1790, AD1825, AD1842, AD1873 and AD1903 events that were listed in recent published and unpublished documents but do not provide any details to describe and confirm the eruptions except for listing a default VEI of 2. Pyroclastic density currents brought devastating impacts to the communities around Taal during the AD1749, AD1754, AD1911 and AD1965 eruptions and remain the biggest threat in the case of renewed volcanic activity. Significant implications for aviation are implied by the narrative of tephra fall dispersal towards Manila, the central gateway of international aviation operation in the Philippines, during the AD1754 eruptions. The dispersal of tephra in the event of an explosive eruption at Taal towards Metro Manila would have catastrophic effects to transport, utilities and business activity, potentially generating enormous economic losses. Hazards from earthquake events associated with future volcanic activity may also have localized impacts. Occurrences of liquefaction phenomena as a consequence of severe ground shaking are interpreted during the AD1749, AD1754, and AD1911 eruptions. More work needs to be done to develop a comprehensive understanding of the hazards and risks associated with an explosive eruption at Taal Volcano, especially related to the older Quaternary caldera-forming eruptions that produced large-volume pyroclastic deposits that are extensively distributed and exposed. We acknowledge that there may be additional prehistoric eruptions where the eruptive products have not been preserved, recognized or reported. Events that cannot be verified or do not have sufficient details to confirm the eruption, have been downgraded to “uncertain”. Eruptions that are confirmed with identified dispersal and emplacement of tephra fall and other eruptive deposits, as interpreted from narrated records, could provide crucial information that may be utilized in hazard assessment.
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    Petrology and geochemistry of Camiguin Island, southern Philippines: insights to the source of adakites and other lavas in a complex arc setting
    Castillo, Paterno R.; Janney, Philip E.; Solidum, Renato Jr. U. (Springer Science and Business Media LLC, 1999-01-21)
    Camiguin is a small volcanic island located 12 km north of Mindanao Island in southern Philippines. The island consists of four volcanic centers which have erupted basaltic to rhyolitic calcalkaline lavas during the last ∼400 ka. Major element, trace element and Sr, Nd and Pb isotopic data indicate that the volcanic centers have produced a single lava series from a common mantle source. Modeling results indicate that Camiguin lavas were produced by periodic injection of a parental magma into shallow magma chambers allowing assimilation and fractional crystallization (AFC) processes to take place. The chemical and isotopic composition of Camiguin lavas bears strong resemblance to the majority of lavas from the central Mindanao volcanic field confirming that Camiguin is an extension of the tectonically complex Central Mindanao Arc (CMA). The most likely source of Camiguin and most CMA magmas is the mantle wedge metasomatized by fluids dehydrated from a subducted slab. Some Camiguin high-silica lavas are similar to high-silica lavas from Mindanao, which have been identified as “adakites” derived from direct melting of a subducted basaltic crust. More detailed comparison of Camiguin and Mindanao adakites with silicic slab-derived melts and magnesian andesites from the western Aleutians, southernmost Chile and Batan Island in northern Philippines indicates that the Mindanao adakites are not pure slab melts. Rather, the CMA adakites are similar to Camiguin high-silica lavas which are products of an AFC process and have negligible connection to melting of subducted basaltic crust.
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    Limited progress in improving gender and geographic representation in coral reef science
    Ahmadia, Gabby N.; Cheng, Samantha H.; Andradi-Brown, Dominic A.; Baez, Stacy K.; Barnes, Megan D.; Bennett, Nathan J.; Campbell, Stuart J.; Darling, Emily S.; Gill, David; Gress, Erika; Gurney, Georgina G.; Horigue, Vera; Jakub, Raymond; Kennedy, Emma V.; Mahajan, Shauna L.; Mangubhai, Sangeeta; Matsuda, Shayle B.; Muthiga, Nyawira A.; Navarro, Michael O.; Santodomingo, Nadia; Vallès, Henri; Veverka, Laura; Villagomez, Angelo; Wenger, Amelia S.; Wosu, Adaoma (Frontiers Media SA, 2021-09-29)
    Despite increasing recognition of the need for more diverse and equitable representation in the sciences, it is unclear whether measurable progress has been made. Here, we examine trends in authorship in coral reef science from 1,677 articles published over the past 16 years (2003–2018) and find that while representation of authors that are women (from 18 to 33%) and from non-OECD nations (from 4 to 13%) have increased over time, progress is slow in achieving more equitable representation. For example, at the current rate, it would take over two decades for female representation to reach 50%. Given that there are more coral reef non-OECD countries, at the current rate, truly equitable representation of non-OECD countries would take even longer. OECD nations also continue to dominate authorship contributions in coral reef science (89%), in research conducted in both OECD (63%) and non-OECD nations (68%). We identify systemic issues that remain prevalent in coral reef science (i.e., parachute science, gender bias) that likely contribute to observed trends. We provide recommendations to address systemic biases in research to foster a more inclusive global science community. Adoption of these recommendations will lead to more creative, innovative, and impactful scientific approaches urgently needed for coral reefs and contribute to environmental justice efforts.
    We acknowledge the contributions of the many unrecognized and undervalued individuals in coral reef research whose efforts have made it possible for the field to progress. These scientists have collected data, translated across languages, coordinated field work, welcomed foreign visitors to their countries, shared ideas, trained and mentored students, become friends, inspired, and built the foundation for the discipline we know today. We acknowledge the work of all coral reef scientists who continue day after day to pursue equity, inclusion, and justice in the field and for their colleagues and themselves.
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    Multifaceted assessment of wastewater-based epidemiology for SARS-CoV-2 in selected urban communities in Davao City, Philippines: A pilot study
    Otero, Maria Catherine B.; Murao, Lyre Anni E.; Limen, Mary Antoinette G.; Caalim, Daniel Rev A.; Gaite, Paul Lorenzo A.; Bacus, Michael G.; Acaso, Joan T.; Miguel, Refeim M.; Corazo, Kahlil; Knot, Ineke E.; Sajonia, Homer; de los Reyes, Francis L.; Jaraula, Caroline Marie B.; Baja, Emmanuel S.; Del Mundo, Dann Marie N. (MDPI, 2022-07-19)
    Over 60 countries have integrated wastewater-based epidemiology (WBE) in their COVID-19 surveillance programs, focusing on wastewater treatment plants (WWTP). In this paper, we piloted the assessment of SARS-CoV-2 WBE as a complementary public health surveillance method in susceptible communities in a highly urbanized city without WWTP in the Philippines by exploring the extraction and detection methods, evaluating the contribution of physico-chemical–anthropogenic factors, and attempting whole-genome sequencing (WGS). Weekly wastewater samples were collected from sewer pipes or creeks in six communities with moderate-to-high risk of COVID-19 transmission, as categorized by the City Government of Davao from November to December 2020. Physico-chemical properties of the wastewater and anthropogenic conditions of the sites were noted. Samples were concentrated using a PEG-NaCl precipitation method and analyzed by RT-PCR to detect the SARS-CoV-2 N, RdRP, and E genes. A subset of nine samples were subjected to WGS using the Minion sequencing platform. SARS-CoV-2 RNA was detected in twenty-two samples (91.7%) regardless of the presence of new cases. Cycle threshold values correlated with RNA concentration and attack rate. The lack of a sewershed map in the sampled areas highlights the need to integrate this in the WBE planning. A combined analysis of wastewater physico-chemical parameters such as flow rate, surface water temperature, salinity, dissolved oxygen, and total dissolved solids provided insights on the ideal sampling location, time, and method for WBE, and their impact on RNA recovery. The contribution of fecal matter in the wastewater may also be assessed through the coliform count and in the context of anthropogenic conditions in the area. Finally, our attempt on WGS detected single-nucleotide polymorphisms (SNPs) in wastewater which included clinically reported and newly identified mutations in the Philippines. This exploratory report provides a contextualized framework for applying WBE surveillance in low-sanitation areas.
    The authors thank the Davao City Health Office, the local government units under the City Government of Davao, the partner hospitals for their support and assistance, and Diana Aga for discussions on sample collection and analyses. The authors would also like to thank the members of the Bortz Virology Laboratory at the University of Alaska Anchorage- Ralf Dagdag and Matthew Redlinger, Amanda Warr from the Roslin Institute, Nicole Wheeler from the University of Birmingham, Lara Urban, co-founder of PuntSeq, and Joe Russell from MRI Global for their expert advice in nanopore and wastewater sequencing.
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    Two hidden mtDNA-clades of crown-of-thorns starfish in the Pacific Ocean
    Yasuda, Nina; Inoue, Jun; Hall, Michael R.; Nair, Manoj R.; Adjeroud, Mehdi; Fortes, Miguel D.; Nishida, Mutsumi; Tuivavalagi, Nat; Ravago-Gotanco, Rachel; Forsman, Zac H.; Soliman, Taha; Koyanagi, Ryo; Hisata, Kanako; Motti, Cherie A.; Satoh, Noriyuki (Frontiers Media SA, 2022-04-27)
    Recurring outbreaks of crown-of-thorns starfish (COTS) severely damage healthy corals, especially in the Western Pacific Ocean. To obtain a better understanding of population genetics of COTS and historical colonization across the Pacific Ocean, complete mitochondrial genomes were sequenced from 243 individuals collected in 11 reef regions. Our results indicate that Pacific COTS (Acanthaster cf. solaris) comprise two major clades, an East-Central Pacific (ECP) clade and a Pan-Pacific (PP) clade, separation of which was supported by high bootstrap value. The ECP clade consists of COTS from French Polynesia, Fiji, Vanuatu and the Great Barrier Reef (GBR). The Hawaii population is unique within this clade, while California COTS are included in EPC clade. On the other hand, the PP clade comprises multiple lineages that contain COTS from Vietnam, the Philippines, Japan, Papua New Guinea, Micronesia, the Marshall Islands, GBR, Vanuatu, Fiji and French Polynesia. For example, a lineage of the PP clade, which has the largest geographic distribution, includes COTS from all of these locations. These results suggest two alternative histories of current geographic distributions of COTS in the Pacific Ocean, an ECP clade ancestry or Western Pacific clade ancestry. Although further questions remain to be explored, this discovery provides an evolutionary context for the interpretation of COTS population structure which will aid future coral reef research in the Pacific Ocean, and ultimately improve reef management of COTS.
    We thank the following people for their help with sample collection: Dr. Hugh Sweatman and the AIMS Bioresources Library for GBR samples, Dr. Molly Timmers for Hawaiian samples, Geoff Jones and Jeff Kinch for Papua New Guinean samples, Monal Lal for Fijian samples, Christina Shaw for Vanuatu samples, Hoang Dinh Chieu for Vietnamese samples, and Hiromitsu Ueno for Japanese samples. The DNA Sequencing Section and IT section of OIST are acknowledged for its expert help with genome sequencing and bioinfomatic analysis. Last, but not least, we acknowledge the traditional owners of the lands and sea country on which this research took place.
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    Anti-inflammatory activity of monosubstituted xestoquinone analogues from the marine sponge Neopetrosia compacta
    Susana, Shalice R.; Salvador-Reyes, Lilibeth A. (MDPI, 2022-03-22)
    Chronic inflammation is recognized as a contributor to multiple chronic diseases, such as cancer, cardiovascular, and autoimmune disorders. Here, a natural products-initiated discovery of anti-inflammatory agents from marine sponges was undertaken. From the screening of 231 crude extracts, a total of 30 extracts showed anti-inflammatory activity with no direct cytotoxic effects at 50 μg/mL on RAW 264.7 (ATCC®TIB-71™) murine macrophage cells stimulated with 1 μg/mL lipopolysaccharide (LPS). Bioactivity-guided purification of the anti-inflammatory extract from the sponge Neopetrosia compacta led to the isolation of xestoquinone (1), adociaquinone B (2), adociaquinone A (3), 14-hydroxymethylxestoquinone (4), 15-hydroxymethylxestoquinone (5), and an inseparable 2:1 mixture of 14-methoxyxestoquinone and 15-methoxyxestoquinone (6). Compounds 1–6 caused a concentration-dependent reduction of nitric oxide (NO) production in LPS-stimulated RAW 264.7 cells, with 4–6 having low micromolar IC50 and acceptable selectivity index. Gene expression analysis using qRT-PCR showed that 1, 5, and 6 downregulated Il1b and Nos2 expression by 2.1- to 14.8-fold relative to the solvent control at 10 μM. Xestoquinone (1) and monosubstituted analogues (4–6), but not the disubstituted adociaquinones (2 and 3), caused Nrf2 activation in a luciferase reporter MCF7 stable cells. Compounds 5 and 6 caused a modest increase in Nqo1 gene expression at 10 μM. The anti-inflammatory activity of xestoquinone (1) and monosubstituted analogues (4–6) may, in part, be mediated by Nrf2 activation, leading to attenuation of inflammatory mediators such as IL-1β and NOS2.
    Samples were collected under gratuitous permit numbers GP-0084-15 and GP-0123-17, issued by the Department of Agriculture of the Philippines. We thank the municipalities of Bolinao, Pangasinan, and Puerto Galera, Oriental Mindoro for permission for sample collection. We acknowledge assistance from Z. L. Malto and DDHP chemical ecology group in obtaining the mass spectrometric data and sample collection, respectively.
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    Global mass spectrometric analysis reveals chemical diversity of secondary metabolites and 44-Methylgambierone production in Philippine Gambierdiscus strains
    Malto, Zabrina Bernice L.; Benico, Garry A.; Batucan, Jeremiah D.; Dela Cruz, James; Romero, Marc Lawrence J.; Azanza, Rhodora V.; Salvador-Reyes, Lilibeth A. (Frontiers Media SA, 2022-02-04)
    Surveillance and characterization of emerging marine toxins and toxigenic dinoflagellates are warranted to evaluate their associated health risks. Here, we report the occurrence of the ciguatera poisoning-causative dinoflagellate Gambierdiscus balechii in the Philippines. Toxin production and chemical diversity of secondary metabolites in G. balechii GtoxSAM092414, G. balechii Gtox112513, and the recently reported Gambierdiscus carpenteri Gam1BOL080513 were assessed using targeted and untargeted UPLC-MS/MS analysis and radioligand receptor-binding assay (RBA). 44-methylgambierone was produced by all three strains, albeitwith different levels based on RBA and UPLC-HRMS/MS analysis. The fatty acid composition was similar in all strains, while subtle differences in monosaccharide content were observed, related to the collection site rather than the species. Molecular networking using the GNPS database identified 45 clusters belonging to at least ten compound classes, with terpene glycosides, carbohydrate conjugates, polyketides, and macrolides as major convergence points. Species-specific peptides and polyhydroxylated compounds were identified in G. balechii GtoxSAM092414 and G. carpenteri Gam1BOL080513, respectively. These provide a glimpse of the uncharacterized biosynthetic potential of benthic dinoflagellates and highlight the intricate and prolific machinery for secondary metabolites production in these organisms.
    We would like to thank H. Junio and the Secondary Metabolites Profiling Laboratory of the Institute of Chemistry, University of the Philippines Diliman and K. B. Davis for assistance in the conduct of this study.