National Committee on Marine Sciences (NCMS)
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- The complete mitochondrial genome of a wild-collected Kappaphycus malesianus (Solieriaceae, Rhodophyta)Crisostomo, Bea A.; Dumilag, Richard V.; Roleda, Michael Y.; Lluisma, Arturo O. (Taylor & Francis, 2023-03-04)Kappaphycus malesianus is a red seaweed farmed primarily for its carrageenan, a polysaccharide important in the food and pharmaceutical industries. Among the commercially cultivated Kappaphycus species, only K. malesianus has no mitogenome data available. Here, we assembled the mitochondrial genome of K. malesianus from next-generation sequencing data. The circular mitogenome consisted of 25,250 base pairs (bp) with a GC content of 30.25%. These values were comparable to previously sequenced solieriacean mitogenomes. Structural features, such as the stem-loop and hairpin, which were previously reported in other rhodophytes mitochondrial DNA, were also identified. The annotated genes (24 protein-coding genes, 24 tRNA genes, and 2 rRNA genes) were arranged in an order similar to the other available solieriacean mitogenomes. Lastly, phylogenetic analysis using 23 predicted protein domains showed the sister relationship of K. malesianus with other Kappaphycus species.The authors are grateful to Z.-Z. Aguinaldo, S. Damsik, and J. Turong for aiding during laboratory and field works. The authors also acknowledge the LGU of Sitangkai, Tawi-Tawi for granting permission for the collection activities. This is contribution no. 495 from the University of the Philippines the Marine Science Institute (UPMSI), Diliman, Quezon City.
- Genetic diversity of Kappaphycus malesianus (Solieriaceae, Rhodophyta) from the PhilippinesDumilag, Richard V.; Crisostomo, Bea A.; Aguinaldo, Zae-Zae A.; Lluisma, Arturo O.; Gachon, Claire M.M.; Roleda, Michael Y. (Elsevier, 2023-07)Kappaphycus farming for carrageenan production is characterized by a strong selective pressure at the genetic level. Traits of agronomic importance are compromised due to domestication bottlenecks and the subsequent events of possible selective breeding of founding cultivars. Kappaphycus malesianus is farmed in Malaysia and the Philippines, and is distributed within the Malesian region. While the majority of genetically characterized specimens of this species are from Malaysia, those from the Philippines are poorly explored. Here, we assessed the genetic diversity of K. malesianus from the Philippines based on cox1 sequences. Of the 15 identified haplotypes, 14 specimens represent three novel haplotypes (wild specimens) that form a group distinct from the main clade comprising most K. malesianus haplotypes known to date. An additional haplotype from a cultivated specimen was identical to that of the most widely distributed haplotype. Our findings demonstrate that the K. malesianus is genetically more diverse than previously recognized. It is expected that higher genetic diversity may be revealed through additional sampling from a wider geographic range and careful application of integrative approaches. Future selective breeding programs in Kappaphycus would benefit from the incorporation of the genetic resources, as provided in this study.
- Impacts of aquaculture nutrient sources: ammonium uptake of commercially important eucheumatoids depends on phosphate levelsNarvarte, Bienson Ceasar V.; Hinaloc, Lourie Ann R.; Gonzaga, Shienna Mae C.; Roleda, Michael Y. (Springer, 2023-09-14)In an integrated multitrophic aquaculture (IMTA) system, seaweeds serve as extractive species that utilize excess nutrients, thereby reducing the risk of eutrophication and promoting sustainable aquaculture. However, the use of excessive fish feeds and the resultant faecal waste as nutrient streams can contribute to variations in nitrogen and phosphorus levels (e.g., primarily NH4+ and PO4−3) in the surrounding area and this may impact the physiology of the integrated seaweeds, particularly on how these species take up inorganic nutrients. In this study, the effect of different PO4−3 levels on NH4+ uptake of the three commercially important eucheumatoids Kappaphycus alvarezii, Kappaphycus striatus and Eucheuma denticulatum was examined under laboratory conditions. Seaweed thalli (n = 4) were incubated in seawater media containing 30 µM NH4+, and 0, 0.5, 1.0, 1.5, 3.0 or 5.0 µM PO4−3 for 1 h under a saturating light level of 116 ± 7.13 µmol photons m−2 s−1 inside a temperature-controlled laboratory. Species-specific responses to PO4−3 levels were observed. For K. alvarezii, maximum NH4+ uptake (17.8 ± 1.6 µmol gDW−1 h−1) was observed at 0.5 µM PO4−3 and the uptake rate declined at higher PO4−3 levels. For K. striatus, NH4+ uptake increased with increasing PO4−3 levels, with maximum N uptake (6.35 ± 0.9 µmol gDW−1 h−1) observed at 5.0 µM PO4−3. For E. denticulatum, maximum NH4+ uptake (14.6 ± 1.4 µmol gDW−1 h−1) was observed at 1.0 µM PO4−3. Our results suggest that among the three eucheumatoid species, the NH4+ uptake of K. striatus persists even at high levels of PO4−3. However, our results also showed that K. striatus had the lowest range of NH4+ uptake rates. These results should be taken into consideration when incorporating eucheumatoids in the IMTA system, where PO4−3levels significantly vary in space and time.This is contribution no. 500 from the Marine Science Institute, University of the Philippines (UPMSI), Diliman. The AlgaE Team would like to thank the Bolinao Marine Laboratory (BML) for providing the venue to conduct our experiments. BCV Narvarte and MY Roleda acknowledge the Sea6 Energy Pvt. Ltd. for sponsorship during the 24th International Seaweed Symposium (ISS) held on February 19-24, 2023, at Hobart, Tasmania, Australia. Likewise, BCV Narvarte and LAR Hinaloc would like to thank the University of the Philippines- Office of the International Linkages (UP-OIL) for providing them with a travel grant to attend the aforementioned symposium. BCV Narvarte also acknowledges the Department of Science and Technology- Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development (DOST-PCAARRD) for his PhD Scholarship (GREAT- Graduate Research and Education Assistantship for Technology Program).
- Molecular-assisted taxonomic study on the Sargassum C.Agardh (Fucales, Phaeophyceae) in Northwestern Luzon, PhilippinesSantiañez, Wilfred John E.; Lastimoso, John Michael L.; Hoshino, Masakazu; Villafuerte, Brix Nester Q.; Kogame, Kazuhiro; Trono, Gavino C. (Museum National d'Histoire Naturelle, 2023-10-18)The diversity of the brown algal genus Sargassum C.Agardh in the Philippines is the highest in the tropical western Pacific Ocean. However, most studies on Philippine Sargassum are based on morphoanatomies and the assumption that the genus is very diverse in the country has never been tested based on molecular information. Considering that many Sargassum species are highly polymorphic and the recent advance on Sargassum systematics facilitated by molecular phylogenetic studies, we believe that the species of Sargassum from the Philippines should now be reassessed with the tools of molecular taxonomy. We present here the results of our molecular-assisted taxonomic studies on the Sargassum of the northern Philippines, particularly along the coasts of four coastal provinces in northwestern Luzon (i.e., Ilocos Norte, Ilocos Sur, La Union, and Pangasinan). We recognized three distinct species lineages, namely, Sargassum aquifolium (Turner) C.Agardh, Sargassum ilicifolium (Turner) C.Agardh, and Sargassum polycystum C.Agardh based on our molecular analyses of 74 specimens from our study areas. Our morphological observations on the range of characters of these species also suggest that several common Sargassum taxa in the Philippines have been misidentified. Particularly, specimens previously attributed to S. kushimotense Yendo should be referred as S. aquifolium while the widely distributed and highly plastic S. ilicifolium is often confused and identified in the Philippines under several names including S. crassifolium J.Agardh, S. cristaefolium C.Agardh, and S. turbinarioides Grunow. Taken together, our results suggest that Sargassum biodiversity in the Philippines may have been inflated by misidentifications, and, that species diversity is actually much lower than initially thought.
- Trans-Arctic asymmetries, melting pots and weak species cohesion in the low-dispersal amphiboreal seaweed Fucus distichusNeiva, João; Assis, Jorge; Fragkopoulou, Eliza; Pearson, Gareth A.; Raimondi, Peter T.; Anderson, Laura; Krause-Jensen, Dorte; Marbà, Núria; Want, Andrew; Selivanova, Olga; Nakaoka, Masahiro; Grant, W. Stewart; Konar, Brenda; Roleda, Michael Y.; Sejr, Mikael K.; Paulino, Cristina; Serrão, Ester A. (Frontiers Media SA, 2024-04-18)Amphiboreal taxa are often composed of vicariant phylogroups and species complexes whose divergence and phylogeographic affinities reflect a shared history of chronic isolation and episodic trans-Arctic dispersal. Ecological filters and shifting selective pressures may also promote selective sweeps, niche shifts and ecological speciation during colonization, but these are seldom considered at biogeographical scales. Here we integrate genetic data and Ecologic Niche Models (ENMs) to investigate the historical biogeography and cohesion of the polymorphic rockweed Fucus distichus throughout its immense amphiboreal range, focusing on trans-Arctic asymmetries, glacial/interglacial dynamics, and integrity of sympatric eco-morphotypes. Populations were sampled throughout the Pacific and the Atlantic, from southern rear-edges to the high-Arctic. They were genotyped for seven microsatellites and an mtDNA spacer, and genetic diversity and structure were assessed from global to local scales. ENMs were used to compare niche divergence and magnitude of post-glacial range shifts in Pacific versus Atlantic sub-ranges. Haplotypic and genotypic data revealed distinct and seemingly isolated Pacific vs Arctic/Atlantic gene-pools, with finer-scale regional sub-structuring pervasive in the Pacific. MtDNA diversity was highly structured and overwhelmingly concentrated in the Pacific. Regionally, Alaska showed the highest intra-population diversity but the lowest levels of endemism. Some sympatric/parapatric ecotypes exhibited distinct genotypic/haplotypic compositions. Strikingly, niche models revealed higher Pacific tolerance to maximum temperatures and predicted a much more consolidated presence in the NE Atlantic. Glacial and modern ranges overlapped extensively in the Pacific, whereas the modern Atlantic range was largely glaciated or emerged during the Last Glacial Maximum. Higher genetic and ecogeographic diversity supports a primary Pacific diversification and secondary Atlantic colonization, also likely reflecting the much larger and more stable climatic refugia in the Pacific. The relic distribution and reduced ecological/morphological plasticity in the NE Atlantic are hypothesized to reflect functional trans-Arctic bottlenecks, recent colonization or competition with congeners. Within the Pacific, Alaska showed signatures of a post-glacial melting pot of eastern and southern populations. Genetic/ecotypic variation was generally not sufficiently discontinuous or consistent to justify recognizing multiple taxonomic entities, but support a separate species in the eastern Pacific, at the southern rear-edge. We predict that layered patterns of phylogeographic structure, incipient speciation and niche differences might be common among widespread low-dispersal amphiboreal taxa.The authors thank Marta Valente (CCMAR), André Silva and Diogo Brito for sequencing and genotyping work and all the people involved in sample collection. Samples from Logy Bay were kindly collected by Kyle R. Millar. DK-J and NM thank Hurtigruten’s FRAM cruise for help with sampling along the Greenland west coast. Greenland sampling was also connected with campaigns for the MarineBasis component of the Greenland Ecosystem Monitoring (GEM) Programme in Nuuk and Young Sound, which is acknowledged.
- Seaweed as a resilient food solution after a nuclear warJehn, Florian Ulrich; Dingal, Farrah Jasmine; Mill, Aron; Harrison, Cheryl; Ilin, Ekaterina; Roleda, Michael Y.; James, Scott C.; Denkenberger, David (American Geophysical Union, 2024-01-09)Abrupt sunlight reduction scenarios such as a nuclear winter caused by the burning of cities in a nuclear war, an asteroid/comet impact or an eruption of a large volcano inject large amounts of particles in the atmosphere, which limit sunlight. This could decimate agriculture as it is practiced today. We therefore need resilient food sources for such an event. One promising candidate is seaweed, as it can grow quickly in a wide range of environmental conditions. To explore the feasibility of seaweed after nuclear war, we simulate the growth of seaweed on a global scale using an empirical model based on Gracilaria tikvahiae forced by nuclear winter climate simulations. We assess how quickly global seaweed production could be scaled to provide a significant fraction of global food demand. We find seaweed can be grown in tropical oceans, even after nuclear war. The simulated growth is high enough to allow a scale up to an equivalent of 45% of the global human food demand (spread among food, animal feed, and biofuels) in around 9–14 months, while only using a small fraction of the global ocean area. The main limiting factor being the speed at which new seaweed farms can be built. The results also show that the growth of seaweed increases with the severity of the nuclear war, as more nutrients become available due to increased vertical mixing. This means that seaweed has the potential to be a viable resilient food source for abrupt sunlight reduction scenarios.