menu.header.image.unacom.logo
 

National Committee on Marine Sciences (NCMS)

Permanent URI for this communityhttps://repository.unesco.gov.ph/handle/123456789/6

Browse

Filters

2022 - 202423

Settings

Start date: 2022SDG: search.filters.sdg.SDG 12 - Responsible consumption and production

Search Results

Now showing 1 - 10 of 23
  • No Thumbnail Available
    Characterization of Alexandrium tamutum (Dinophyceae) isolated from Philippine waters, with the rare detection of paralytic shellfish toxin
    Benico, Garry; Azanza, Rhodora (Association of Systematic Biologists of the Philippines, 2022-04-01)
    Alexandrium tamutum M.Montressor, A.Beran & U.John is a non-toxic, bloom-forming dinoflagellate species commonly reported in temperate waters. In this study, 8 cultures of A. tamutum established from Bolinao Channel and Manila Bay, Philippines were characterized in terms of their morphology, phylogeny and toxicity. Cells were roundish, measuring 25.5 –29.84 µm long and 26.2–28.45 µm wide. The nucleus is equatorially elongated and located at the center of the cell. The chloroplasts are numerous, golden brown in color and radially arranged. Thecal tabulation is typical of Alexandrium: APC, 4', 6'', 6c, 6s, 5''', 2''''. Shape of the taxonomically informative thecal plates such as sixth precingular plate (6'') and posterior sulcal plate (sp) was similar to A. tamutum, which confirms the species identity. However, the presence of anterior and posterior attachment pores observed in our cultured isolates is the first case in this species. Molecular phylogeny inferred from LSU rDNA and ITS supports our identification by forming a well-supported clade composed of A. tamutum strains from other geographic regions. HPLC analysis showed that A. tamutum is generally non-toxic except for strain ATC9 which has low amount of decarbamoylsaxitoxin (dcSTX), resulting to a toxicity of 0.07 fmole STX eq per cell. The present study reports the first verified occurrence of Philippine A. tamutum with reliable morphological and molecular information, including the first record in Manila Bay and first detection of PST in one strain at a certain culture period.
    We acknowledge the Department of Science and Technology Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (DOST PCAARRD) and the University of the Philippines-The Marine Science Institute (UP-MSI) for the funding support. We are grateful for the assistance of Joshua Vacarizas, Keith Pinto and Jenelyn Mendoza for the molecular and toxicity analyses of the cultures. We also acknowledge Estrelita Flores, Emelita Eugenio and Jayson Orpeza for their assistance during the fieldwork and other logistical support.
  • No Thumbnail Available
    Connections and clustering of Paralytic Shellfish Toxin events among coastal embayments in an archipelago partly mediated by advection
    Punongbayan, Andalus T.; Wang, Ysabel D.; Villanoy, Cesar L.; Yñiguez, Aletta T. (Elsevier, 2022-01)
    The potential for advection to influence harmful algal bloom (HAB) spread in adjacent embayments and islands has not been investigated in the Philippines as previous studies have focused on HAB dynamics within specific embayments. Advection of HABs may be relevant in the Samar-Leyte region where adjacent sites are subject to recurrent blooms of Pyrodinium bahamense. We used different analyses to extract the potential role of advection in blooms in the region. First, we used Bayesian and information theoretic approaches applied to historical data on shellfish bans to quantify spatial dependencies in HAB occurrences between sites. Then, to determine whether such dependencies are related to circulation patterns in the region, we analyzed connectivity using a hydrodynamic model coupled with a conservative tracer-based HAB model. The Bayesian network showed that in 7 out of 11 sites, the probability of a shellfish ban depended on the state of an adjacent site. Site pairs with direct dependence relations also shared relatively high similarity in HAB occurrences over time. In the modelled network, bans tend to occur sequentially, spreading from a few sites with relatively high probabilities for ban events. A subset of sites (sources) were found to be informative of future HAB event probabilities in other sites (destinations) over time lags that are generally longer the farther the destination. Modelled surface advection showed high connectivity strengths between sources and destinations associated with circulation features, e.g., an anticyclonic current in Leyte, wind-driven coastal current in western Samar, and tidally-driven flow in the shallow embayments in southwest Samar. High connectivities were correlated with direct dependence relations in the Bayesian network. Connectivity explained up to about 1/3 of the variance in statistical dependencies between ban signals. Our results show that Paralytic Shellfish Toxin events within this region can be due to advection of blooms originating from nearby areas rather than localized cyst dynamics within an embayment. Particular sites were also identified as potential indicator sites within spatial clusters for monitoring since they are typically where blooms originate and spread from.
  • No Thumbnail Available
    Community structure of periphytic diatoms in early-stage marine biofilms in a mariculture-impacted area
    Baure, Jerwin; San Diego-McGlone, Maria Lourdes; Juinio–Meñez, Marie Antonette (Science and Technology Information Institute, 2022-07-06)
    Periphytic diatoms constitute a major part of complex unicellular aggregations called marine biofilm or periphyton, of which little is known about in tropical marine environments. The early-stage community structure of periphytic diatom genera on two artificial substrates – glass slide and polycarbonate sheets was characterized. These artificial substrates were placed underwater for 6 d and examined on Days 1, 3, and 6 in four sites around Santiago Island, Bolinao, Pangasinan, Philippines, with different relative distances from the intensive milkfish mariculture area. Correlations of diatom community structures in these sites with physico-chemical factors were investigated. The five most abundant diatom genera – namely, Cylindrotheca, Nitzschia, Navicula, Amphora, and Pleurosigma – exhibited a weak correlation with nutrients. Less abundant genera Pseudonitzschia, Haslea, Bacillaria, Thalassionema, Rhizosolenia, Eucampia, Diploneis, Asterionellopsis, Chaetoceros, Bacteriastrum, Licmophora, Skeletonema, Lioloma, Thalassiosira, and Thalassiothrix showed a positive correlation with nutrients. Among sites, the highest benthic diatom cell densities (4.6 × 105 cells cm−2) after 6 d was found in Lucero. Generic richness and diversity varied among sites, with the highest diversity (H’ = 1.58) on Day 1 in Tomasa, the site nearest to the mariculture area, whereas the highest richness (D = 2.17–3.26) for all days and diversity (H’ = 1.38–1.52) for Days 3 and 6 were recorded in Silaqui, the most distal site. Generally, the highest diversity and richness were found on Day 1, which then decreased on succeeding days in all sites. The lack of a clear patternin community structure among sites relative to the proximity of these sites to the mariculture area may in part be attributed to the presence of other nutrient sources. Results of the study provide baseline information on the variability of periphytic diatom community structure in a mariculture-impacted area, and insights on how benthic diatoms may be used in monitoring the impacts of nutrient pollution.
    This work was supported by the Department of Science and Technology–Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development under Grant QMSR-MRRDMEC-295-1449. The authors would like to thank Tirso O. Catbagan and Garry R. Bucol for their assistance during field sampling, and Timothy James Cipriano for the site map. We would also like to thank the Marine Biogeochemistry Laboratory of the Marine Science Institute, University of the Philippines Diliman for providing environmental data.
  • No Thumbnail Available
    Age, growth, and population structure of Conomurex luhunuas
    Sanchez-Escalona, Katherine; Aliño, Porfirio (National Fisheries Research and Development Institute, 2022-12)
    Age and growth dynamics of Conomurex luhuanus were investigated to determine the population structure. Age-specific change in shell shape determined with geometric morphometrics revealed discrimination of shape between 0-3 years old at 99–100% while 3–4 years old can be separated with 81% certainty. Using the age discrimination data, K and L∞ were estimated at 1.00 year and 7.28 cm, respectively. Recruitment is bimodal with natural mortality (M) of 0.71 and fishing mortality (F) approximated at 3.92 year. The exploitation rate (E) is 0.85 year, indicating probable overharvesting of the population under study. The presence of a deep-water population, age-specific burying behavior, and bimodal recruitment pattern are possible resilience factors.
    The study was supported by a grant from PCAARRD-DOST.
  • Thumbnail Image
    Global mass spectrometric analysis reveals chemical diversity of secondary metabolites and 44-Methylgambierone production in Philippine Gambierdiscus strains
    Malto, Zabrina Bernice L.; Benico, Garry A.; Batucan, Jeremiah D.; Dela Cruz, James; Romero, Marc Lawrence J.; Azanza, Rhodora V.; Salvador-Reyes, Lilibeth A. (Frontiers Media SA, 2022-02-04)
    Surveillance and characterization of emerging marine toxins and toxigenic dinoflagellates are warranted to evaluate their associated health risks. Here, we report the occurrence of the ciguatera poisoning-causative dinoflagellate Gambierdiscus balechii in the Philippines. Toxin production and chemical diversity of secondary metabolites in G. balechii GtoxSAM092414, G. balechii Gtox112513, and the recently reported Gambierdiscus carpenteri Gam1BOL080513 were assessed using targeted and untargeted UPLC-MS/MS analysis and radioligand receptor-binding assay (RBA). 44-methylgambierone was produced by all three strains, albeitwith different levels based on RBA and UPLC-HRMS/MS analysis. The fatty acid composition was similar in all strains, while subtle differences in monosaccharide content were observed, related to the collection site rather than the species. Molecular networking using the GNPS database identified 45 clusters belonging to at least ten compound classes, with terpene glycosides, carbohydrate conjugates, polyketides, and macrolides as major convergence points. Species-specific peptides and polyhydroxylated compounds were identified in G. balechii GtoxSAM092414 and G. carpenteri Gam1BOL080513, respectively. These provide a glimpse of the uncharacterized biosynthetic potential of benthic dinoflagellates and highlight the intricate and prolific machinery for secondary metabolites production in these organisms.
    We would like to thank H. Junio and the Secondary Metabolites Profiling Laboratory of the Institute of Chemistry, University of the Philippines Diliman and K. B. Davis for assistance in the conduct of this study.
  • Thumbnail Image
    Modified oxylipins as inhibitors of biofilm formation in Staphylococcus epidermidis
    Peran, Jacquelyn E.; Salvador-Reyes, Lilibeth A. (Frontiers Media SA, 2024-05-23)
    New approaches to combating microbial drug resistance are being sought, with the discovery of biofilm inhibitors considered as alternative arsenal for treating infections. Natural products have been at the forefront of antimicrobial discovery and serve as inspiration for the design of new antibiotics. We probed the potency, selectivity, and mechanism of anti-biofilm activity of modified oxylipins inspired by the marine natural product turneroic acid. Structure-activity relationship (SAR) evaluation revealed the importance of the trans-epoxide moiety, regardless of the position, for inhibiting biofilm formation. trans-12,13-epoxyoctadecanoic acid (1) and trans-9,10 epoxyoctadecanoic acid (4) selectively target the early stage of biofilm formation, with no effect on planktonic cells. These compounds interrupt the formation of a protective polysaccharide barrier by significantly upregulating the ica operon’s transcriptional repressor. This was corroborated by docking experiment with SarA and scanning electron micrographs showing reduced biofilm aggregates and the absence of thread-like structures of extrapolymeric substances. In silico evaluation revealed that 1 and 4 can interfere with the AgrA-mediated communication language in Staphylococci, typical to the diffusible signal factor (DSF) capacity of lipophilic chains.
  • No Thumbnail Available
    Sargassum sp. juice as an early juvenile supplemental feed for Stichopus cf. horrens
    Ibañez, Glaiza; Cabanayan-Soy, Rona; Baure, Jerwin; Juinio-Meñez, Marie Antonette (Springer, 2022-09-28)
    The development of an efficient and low-cost feed is important to reduce the production and maintenance costs of microalgae. In this study, two experiments were conducted to evaluate the feasibility of using Sargassum sp. juice (SARG) to boost the growth and survival of post-settled Stichopus cf. horrens juveniles. Experiment 1 tested whether SARG improves growth compared with live microalgae diets, Chaetoceros calcitrans (Cc), combined Cc and Navicula ramosissima (Nr), and an unfed treatment. Experiment 2 determined the best SARG concentration—high feeding regime (HFR; 1 mL ind−1), medium (MFR; 0.5 mL ind−1), or low (LFR; 0.25 ml ind−1), relative to live microalgae Chaetoceros muelleri (CM). Juveniles in both experiments were reared for 30 days. In Experiment 1, the average daily growth rate (DGRL) of juveniles in SARG (0.04 ± 0.01 cm d−1) was the highest although not significantly different from Cc and Cc + Nr, but was significantly higher than the control. In Experiment 2, DGRL at day 14 in HFR (− 0.02 ± 0.02 cm d−1) was significantly lower than LFR (0.01 ± 0.01 cm d−1) and MFR (0.02 ± 0.02 cm d−1). Survival was higher in all SARG treatments compared with CM, while a significant decrease in feeding activity was observed in HFR by day 30. Results indicate that concentrations of 0.25–0.5 mL SARG per juvenile can boost growth and be an alternate diet for post-settled juveniles during early rearing. However, SARG alone is not sufficient to maintain growth beyond 3 weeks. With SARG feed supplementation and water quality management, the scaling-up of juvenile production of this emergent culture species can be accelerated.
    Our sincere gratitude to Mr. Tirso Catbagan and Mr. Garry Bucol for their assistance in the set-up of the experiments. We also thank Ms. Rose Angeli Rioja and Ms. JayR Gorospe for providing inputs to improve this paper. We also thank the Sea cucumber Research Team and the staff of the University of the Philippines—Marine Science Institute, Bolinao Marine Laboratory for their support and assistance during the conduct of the study.
  • Thumbnail Image
    Complex patterns of genetic structure in the sea cucumber Holothuria (Metriatyla) scabra from the Philippines: implications for aquaculture and fishery management
    Lal, Monal M.; Macahig, Deo A. S.; Juinio-Meñez, Marie A.; Altamirano, Jon P.; Noran-Baylon, Roselyn; de la Torre-de la Cruz, Margarita; Villamor, Janine L.; Gacura, Jonh Rey L.; Uy, Wilfredo H.; Mira-Honghong, Hanzel; Southgate, Paul C.; Ravago-Gotanco, Rachel (Frontiers Media SA, 2024-06-04)
    The sandfish Holothuria (Metriatyla) scabra, is a high-value tropical sea cucumber harvested from wild stocks for over four centuries in multi-species fisheries across its Indo-Pacific distribution, for the global bêche-de-mer (BDM) trade. Within Southeast Asia, the Philippines is an important centre of the BDM trade, however overharvesting and largely open fishery management have resulted in declining catch volumes. Sandfish mariculture has been developed to supplement BDM supply and assist restocking efforts; however, it is heavily reliant on wild populations for broodstock supply. Consequently, to inform fishery, mariculture, germplasm and translocation management policies for both wild and captive resources, a high-resolution genomic audit of 16 wild sandfish populations was conducted, employing a proven genotyping-by-sequencing approach for this species (DArTseq). Genomic data (8,266 selectively-neutral and 117 putatively-adaptive SNPs) were used to assess fine-scale genetic structure, diversity, relatedness, population connectivity and local adaptation at both broad (biogeographic region) and local (within-biogeographic region) scales. An independent hydrodynamic particle dispersal model was also used to assess population connectivity. The overall pattern of population differentiation at the country level for H. scabra in the Philippines is complex, with nine genetic stocks and respective management units delineated across 5 biogeographic regions: (1) Celebes Sea, (2) North and (3) South Philippine Seas, (4) South China and Internal Seas and (5) Sulu Sea. Genetic connectivity is highest within proximate marine biogeographic regions (mean Fst=0.016), with greater separation evident between geographically distant sites (Fst range=0.041–0.045). Signatures of local adaptation were detected among six biogeographic regions, with genetic bottlenecks at 5 sites, particularly within historically heavily-exploited locations in the western and central Philippines. Genetic structure is influenced by geographic distance, larval dispersal capacity, species-specific larval development and settlement attributes, variable ocean current-mediated gene flow, source and sink location geography and habitat heterogeneity across the archipelago. Data reported here will inform accurate and sustainable fishery regulation, conservation of genetic diversity, direct broodstock sourcing for mariculture and guide restocking interventions across the Philippines.
  • No Thumbnail Available
    Genetic diversity of Kappaphycus malesianus (Solieriaceae, Rhodophyta) from the Philippines
    Dumilag, Richard V.; Crisostomo, Bea A.; Aguinaldo, Zae-Zae A.; Lluisma, Arturo O.; Gachon, Claire M.M.; Roleda, Michael Y. (Elsevier, 2023-07)
    Kappaphycus farming for carrageenan production is characterized by a strong selective pressure at the genetic level. Traits of agronomic importance are compromised due to domestication bottlenecks and the subsequent events of possible selective breeding of founding cultivars. Kappaphycus malesianus is farmed in Malaysia and the Philippines, and is distributed within the Malesian region. While the majority of genetically characterized specimens of this species are from Malaysia, those from the Philippines are poorly explored. Here, we assessed the genetic diversity of K. malesianus from the Philippines based on cox1 sequences. Of the 15 identified haplotypes, 14 specimens represent three novel haplotypes (wild specimens) that form a group distinct from the main clade comprising most K. malesianus haplotypes known to date. An additional haplotype from a cultivated specimen was identical to that of the most widely distributed haplotype. Our findings demonstrate that the K. malesianus is genetically more diverse than previously recognized. It is expected that higher genetic diversity may be revealed through additional sampling from a wider geographic range and careful application of integrative approaches. Future selective breeding programs in Kappaphycus would benefit from the incorporation of the genetic resources, as provided in this study.
  • Thumbnail Image
    Potential of sediment bacterial communities from Manila Bay (Philippines) to degrade low-density polyethylene (LDPE)
    Gomez, Norchel Corcia F.; Onda, Deo Florence L. (Springer, 2022-12-24)
    The persistence of plastics and its effects in different environments where they accumulate, particularly in coastal areas, is of serious concern. These plastics exhibit signs of degradation, possibly mediated by microorganisms. In this study, we investigated the potential of sediment microbial communities from Manila Bay, Philippines, which has a severe plastics problem, to degrade low-density polyethylene (LDPE). Plastics in selected sites were quantified and sediment samples from sites with the lowest and highest plastic accumulation were collected. These sediments were then introduced and incubated with LDPE in vitro for a period of 91 days. Fourier transform infrared spectroscopy detected the appearance of carbonyl and vinyl products on the plastic surface, indicating structural surface modifications attributed to polymer degradation. Communities attached to the plastics were profiled using high-throughput sequencing of the V4-V5 region of the 16S rRNA gene. Members of the phylum Proteobacteria dominated the plastic surface throughout the experiment. Several bacterial taxa associated with hydrocarbon degradation were also enriched, with some taxa positively correlating with the biodegradation indices, suggesting potential active roles in the partial biodegradation of plastics. Other taxa were also present, which might be consuming by-products or providing nourishment for other groups, indicating synergy in utilizing the plastic as the main carbon source and creation of a microenvironment within the plastics biofilm. This study showed that sediment microbes from Manila Bay may have naturally occurring microbial groups potentially capable of partially degrading plastics, supporting previous studies that the biodegradation potential for plastics is ubiquitously present in marine microbial assemblages.
    We would like to acknowledge the Protected Area Management and Biodiversity Section of the Conservation and Development Division of the Department of Environment and Natural Resources—National Capital region for allowing us to conduct field work in LPPCHEA. As well as local government units of Brgy. Bucana in Ternate, Brgy. Bucana Malaki in Naic, Brgy. San Rafael III in Noveleta, and Brgy. Baseco in Manila for allowing us to conduct field work and sample collection. We would also like to acknowledge the Marine Research Center under the Marine Environmental Protection Command of the Philippine Coast Guard for providing assistance during one of our fieldworks. Members of the Microbial Oceanography Laboratory for helping during field works. And to Daniel John E. Purganan and Justine Marey S. Bitalac for helping us obtain CLS micrographs.