National Committee on Marine Sciences (NCMS)
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- Perceived global increase in algal blooms is attributable to intensified monitoring and emerging bloom impactsHallegraeff, Gustaaf M.; Anderson, Donald M.; Belin, Catherine; Bottein, Marie-Yasmine Dechraoui; Bresnan, Eileen; Chinain, Mireille; Enevoldsen, Henrik; Iwataki, Mitsunori; Karlson, Bengt; McKenzie, Cynthia H.; Sunesen, Inés; Pitcher, Grant C.; Provoost, Pieter; Richardson, Anthony; Schweibold, Laura; Tester, Patricia A.; Trainer, Vera L.; Yñiguez, Aletta T.; Zingone, Adriana (Springer, 2021-06-08)Global trends in the occurrence, toxicity and risk posed by harmful algal blooms to natural systems, human health and coastal economies are poorly constrained, but are widely thought to be increasing due to climate change and nutrient pollution. Here, we conduct a statistical analysis on a global dataset extracted from the Harmful Algae Event Database and Ocean Biodiversity Information System for the period 1985–2018 to investigate temporal trends in the frequency and distribution of marine harmful algal blooms. We find no uniform global trend in the number of harmful algal events and their distribution over time, once data were adjusted for regional variations in monitoring effort. Varying and contrasting regional trends were driven by differences in bloom species, type and emergent impacts. Our findings suggest that intensified monitoring efforts associated with increased aquaculture production are responsible for the perceived increase in harmful algae events and that there is no empirical support for broad statements regarding increasing global trends. Instead, trends need to be considered regionally and at the species level.
- Quantifying vertical land motion at tide gauge sites using permanent scatterer interferometric synthetic aperture radar and global navigation satellite system solutionsReyes, Rosalie; Bauzon, Ma. Divina Angela; Pasaje, Nikki Alen; Alfante, Rey Mark; De Lara, Pocholo Miguel; Ordillano, Marion; Flores, Paul Caesar; Rediang, Abegail; Nota, Patrick Anthony; Siringan, Fernando; Blanco, Ariel; Bringas, Dennis (Springer, 2022-01-29)One of the consequences of climate change is sea level rise (SLR). Near the coast SLR varies at different locations due to the contributions from regional/local climatic and non-climatic factors. Vertical land motion (VLM) can affect the accuracy of sea level observations from tide gauges (TG) that may exacerbate coastal area inundation/flooding. This study investigated the viability of Permanent Scatterer Interferometric Synthetic Aperture Radar (PSInSAR) to quantify the rate of VLM at the TG sites. Measurements from TG co-located GNSS receivers provide the actual VLM rates and ground truth for PSInSAR-derived rates. Based on the results from the 9 study sites, almost all except one are subsiding. Both PSInSAR and GNSS solutions showed the same trend with rates that correlate at 0.89. Analysis from 20 Active GNSS stations showed 95% of the sites are undergoing land subsidence. This should be a cause of concern for communities near the coastal areas.
- Bacterial community assembly, succession, and metabolic function during outdoor cultivation of Microchloropsis salinaMorris, Megan M.; Kimbrel, Jeffrey A.; Geng, Haifeng; Tran-Gyamfi, Mary Bao; Yu, Eizadora T.; Sale, Kenneth L.; Lane, Todd W.; Mayali, Xavier (American Society for Microbiology, 2022-08-31)
Outdoor cultivation of microalgae has promising potential for renewable bioenergy, but there is a knowledge gap on the structure and function of the algal microbiome that coinhabits these ecosystems. Here, we describe the assembly mechanisms, taxonomic structure, and metabolic potential of bacteria associated with Microchloropsis salina cultivated outdoors. Open mesocosms were inoculated with algal cultures that were either free of bacteria or coincubated with one of two different strains of alga-associated bacteria and were sampled across five time points taken over multiple harvesting rounds of a 40-day experiment. Using quantitative analyses of metagenome-assembled genomes (MAGs), we tracked bacterial community compositional abundance and taxon-specific functional capacity involved in algal-bacterial interactions. One of the inoculated bacteria (Alteromonas sp.) persisted and dispersed across mesocosms, whereas the other inoculated strain (Phaeobacter gallaeciensis) disappeared by day 17 while a taxonomically similar but functionally distinct Phaeobacter strain became established. The inoculated strains were less abundant than 6 numerically dominant newly recruited taxa with functional capacities for mutualistic or saprophytic lifestyles, suggesting a generalist approach to persistence. This includes a highly abundant unclassified Rhodobacteraceae species that fluctuated between 25% and 77% of the total community. Overall, we did not find evidence for priority effects exerted by the distinct inoculum conditions; all mesocosms converged with similar microbial community compositions by the end of the experiment. Instead, we infer that the 15 total populations were retained due to host selection, as they showed high metabolic potential for algal-bacterial interactions such as recycling alga-produced carbon and nitrogen and production of vitamins and secondary metabolites associated with algal growth and senescence, including B vitamins, tropodithietic acid, and roseobacticides.
IMPORTANCE Bacteria proliferate in nutrient-rich aquatic environments, including engineered algal biofuel systems, where they remineralize photosynthates, exchange secondary metabolites with algae, and can influence system output of biomass or oil. Despite this, knowledge on the microbial ecology of algal cultivation systems is lacking, and the subject is worthy of investigation. Here, we used metagenomics to characterize the metabolic capacities of the predominant bacteria associated with the biofuel-relevant microalga Microchloropsis salina and to predict testable metabolic interactions between algae and manipulated communities of bacteria. We identified a previously undescribed and uncultivated organism that dominated the community. Collectively, the microbial community may interact with the alga in cultivation via exchange of secondary metabolites which could affect algal success, which we demonstrate as a possible outcome from controlled experiments with metabolically analogous isolates. These findings address the scalability of lab-based algal-bacterial interactions through to cultivation systems and more broadly provide a framework for empirical testing of genome-based metabolic predictions.
- MPA-FishMApp – a citizen science app that simplifies monitoring of coral reef fish density and biomass in marine protected areasAbesamis, Rene; Balingit, Rodel; de Castro, Romulo; Aguila, Raphael Nelo; Cabiguin, Maryjune; Villagracia, Julius; Susmeña, Marynoll; Montemar, Mario Neil; Yocor, Antonio (National Fisheries Research and Development Institute, 2022-12)Monitoring changes in fish density and biomass inside marine protected areas (MPAs) through fish visual census (FVC) can determine if MPAs are achieving their goal of promoting fish population recovery. Simplified FVC methods have been developed for citizen scientists to enable them to monitor fish populations in MPAs. However, MPA monitoring programs led by local stakeholders remain rare and difficult to sustain due to technical barriers related to FVC data management. Here, we describe and evaluate a novel online app called MPA-FishMApp, which we developed to help stakeholders of MPAs that protect coral reefs in the Philippines efficiently store, analyze, and visualize FVC data. MPA-FishMApp is coupled to a simplified FVC method wherein the observer records only 21 reef fish species groups during surveys. The app provides a simple data entry interface, cloud storage, and algorithms to estimate fish density and biomass. Spatial and temporal trends in fish density and biomass can be instantaneously visualized in the app based on relative importance to fisheries. Field testing suggested that the MPA-FishMApp methodology (simplified FVC and app) is sensitive enough to detect qualitative patterns showing differences in density and biomass that may develop between MPAs and fished sites, especially in fishes that are highly important to fisheries. However, users must have sufficient training and experience in simplified FVC to produce reliable data. MPA-FishMApp may help reverse the lack of monitoring in MPAs across the Philippines and offers an accessible, transparent, and auditable venue for collaboration between citizen scientists and professional scientists.
- A conserved biosynthetic gene cluster is regulated by quorum sensing in a shipworm symbiontRobes, Jose Miguel D.; Altamia, Marvin A.; Murdock, Ethan G.; Concepcion, Gisela; Haygood, Margo G.; Puri, Aaron W. (American Society for Microbiology, 2022-06-14)Bacterial symbionts often provide critical functions for their hosts. For example, wood-boring bivalves called shipworms rely on cellulolytic endosymbionts for wood digestion. However, how the relationship between shipworms and their bacterial symbionts is formed and maintained remains unknown. Quorum sensing (QS) often plays an important role in regulating symbiotic relationships. We identified and characterized a QS system found in Teredinibacter sp. strain 2052S, a gill isolate of the wood-boring shipworm Bactronophorus cf. thoracites. We determined that 2052S produces the signal N-decanoyl-l-homoserine lactone (C10-HSL) and that this signal controls the activation of a biosynthetic gene cluster colocated in the symbiont genome that is conserved among all symbiotic Teredinibacter isolates. We subsequently identified extracellular metabolites associated with the QS regulon, including ones linked to the conserved biosynthetic gene cluster, using mass spectrometry-based molecular networking. Our results demonstrate that QS plays an important role in regulating secondary metabolism in this shipworm symbiont. This information provides a step toward deciphering the molecular details of the relationship between these symbionts and their hosts. Furthermore, because shipworm symbionts harbor vast yet underexplored biosynthetic potential, understanding how their secondary metabolism is regulated may aid future drug discovery efforts using these organisms.
- Somatostatin venom analogs evolved by fish-hunting cone snails: From prey capture behavior to identifying drug leadsRamiro, Iris Bea L.; Bjørn-Yoshimoto, Walden E.; Imperial, Julita S.; Gajewiak, Joanna; Salcedo, Paula Flórez; Watkins, Maren; Taylor, Dylan; Resager, William; Ueberheide, Beatrix; Bräuner-Osborne, Hans; Whitby, Frank G.; Hill, Christopher P.; Martin, Laurent F.; Patwardhan, Amol; Concepcion, Gisela; Olivera, Baldomero M.; Safavi-Hemami, Helena (American Association for the Advancement of Science, 2022-03-25)Somatostatin (SS) is a peptide hormone with diverse physiological roles. By investigating a deep-water clade of fish-hunting cone snails, we show that predator-prey evolution has generated a diverse set of SS analogs, each optimized to elicit specific systemic physiological effects in prey. The increased metabolic stability, distinct SS receptor activation profiles, and chemical diversity of the venom analogs make them suitable leads for therapeutic application, including pain, cancer, and endocrine disorders. Our findings not only establish the existence of SS-like peptides in animal venoms but also serve as a model for the synergy gained from combining molecular phylogenetics and behavioral observations to optimize the discovery of natural products with biomedical potential.
- C30 — A simple, rapid, scientifically valid, and low-cost method for citizen-scientists to monitor coral reefsLicuanan, Wilfredo Y.; Mordeno, Princess Zyrlyn B.; Go, Marco V. (Elsevier, 2021-09)The extent and speed of recent changes in reef coral abundances due to ocean warming and human impacts require more widespread capability to map and measure these changes, especially in countries like the Philippines. We present “C30”, a simple, rapid, scientifically valid, and low-cost method for skin divers or freedivers to take random photo-quadrat images within predefined stations on the upper reef slope. C30 yields coral cover data similar to those collected using the more intensive C5 method and can be as powerful in detecting small differences in reef cover. Less time is also needed for training personnel and sampling. However, more photo-quadrat images, better cameras, and closer collaboration with local scientists are required if higher precision data and estimates of coral diversity are needed from C30. C30 is a valuable tool for participatory, community-based citizen science monitoring of coral reefs.We thank the Department of Science and TechnologyPhilippine Council for Agriculture, Aquatic and Natural Resources Research and Development (QMSR-MRRD-COR-0-1209 and PCAARRD-GIA 4478), and the Department of Environment and Natural Resources Coral Reef Visualization and Assessment, The Philippines Project for funding some of the fieldwork. The initial research on citizen-science monitoring was undertaken with funding from Oscar M. Lopez Center for Climate Change Adaptation and Disaster Risk Management Foundation, Inc., The Philippines (Grant number OMLC RG 2017-18). We also thank the DLSU Innovation and Technology Office for the patent application for the C30 monopod in the Intellectual Property Office of the Philippines. The comments and suggestions of the reviewers are acknowledged and are very much appreciated. WY Licuanan is the holder of the Br H Alfred Shields FSC Professorial Chair in Biology and Br Cresentius Richard Duerr FSC Professorial Chair in Biochemistry.
- Distribution, temporal change, and conservation status of tropical seagrass beds in Southeast Asia: 2000–2020Sudo, Kenji; Quiros, T. E. Angela L.; Prathep, Anchana; Luong, Cao Van; Lin, Hsing-Juh; Bujang, Japar Sidik; Ooi, Jillian Lean Sim; Fortes, Miguel D.; Zakaria, Muta Harah; Yaakub, Siti Maryam; Tan, Yi Mei; Huang, Xiaoping; Nakaoka, Masahiro (Frontiers Media SA, 2021-07-08)Although Southeast Asia is a hotspot of global seagrass diversity, there are considerable information gaps in the distribution of seagrass beds. Broad-scale seagrass distribution has not been updated in the global seagrass database by UNEP-WCMC since 2000, although studies on seagrasses have been undertaken intensively in each region. Here we analyze the recent distribution of tropical seagrass beds, their temporal changes, causes of decline and conservation status in Southeast Asia (plus southern mainland China, Taiwan and Ryukyu Island of Japan) using data collected after 2000. Based on the 195 literature published since 2000, we identified 1,259 point data and 1,461 polygon data showing the distribution of seagrass beds. A large discrepancy was found in the seagrass bed distribution between our updated data and the UNEP-WCMC database, mostly due to inaccurate and low resolution location information in the latter. Temporal changes in seagrass bed area analyzed for 68 sites in nine countries/regions demonstrated that more than 60% of seagrass beds declined at an average rate of 10.9% year–1, whereas 20% of beds increased at an average rate of 8.1% year–1, leading to an overall average decline of 4.7% year–1. Various types of human-induced threats were reported as causes for the decline, including coastal development, fisheries/aquaculture, and natural factors such as typhoons and tsunamis. The percentage of seagrass beds covered with existing marine protected areas (MPAs) varied greatly among countries/regions, from less than 1% in Brunei Darussalam and Singapore to 100% in southern Japan. However, the degree of conservation regulation was not sufficient even in regions with higher MPA coverage. The percentage of seagrass beds within EBSAs (Ecologically and Biologically Significant Area determined by the Convention of Biological Diversity) was higher than that within MPAs because EBSAs cover a greater area than MPAs. Therefore, designating EBSAs as legally effective MPAs can greatly improve the conservation status of seagrass beds in Southeast Asia.This manuscript is a contribution to the Asia-Pacific Marine Biodiversity Observation Network (AP-MBON) of the Group on Earth Observations Biodiversity Observation Network (GEO BON). We are grateful to the members of Phuket Marine Biological Center in Thailand and the Vietnam Academy of Science and Technology for providing local literature and data on seagrass bed distribution. This paper is dedicated to Chittima Aryuthaka who contributed greatly to the development of marine biology and ecology in Asia during her lifetime.
- Dissolved and particulate carbon export from a tropical mangrove‐dominated riverine systemRay, Raghab; Miyajima, Toshihiro; Watanabe, Atsushi; Yoshikai, Masaya; Ferrera, Charissa M.; Orizar, Iris; Nakamura, Takashi; San Diego‐McGlone, Maria Lourdes; Herrera, Eugene C.; Nadaoka, Kazuo (Wiley, 2021-09-24)Despite being a major component in the mangrove carbon (blue carbon) budget, “outwelling” flux (or export to the sea) has gained little attention relative to other biogeochemical fluxes and reservoir carbon stock estimations. This study aims to estimate lateral exchange fluxes of dissolved and particulate organic carbon (DOC, POC) and dissolved inorganic carbon (DIC) from the watershed through a microtidal mangrove-dominated estuary to the coastal sea in Panay Island, Philippines. Along the estuarine transect, consistent addition of DOC, DIC, and POC at higher salinities were attributed to mangrove organic matter input. Upstream groundwater input (carbonate weathering) and downstream mangrove organic matter decomposition (possibly sulfate reduction) were the main controls on DIC. DOC corresponded to relatively pure mangrove sources in creek water, while POC was a mixture of detrital and algal organic matter. The mangrove system acted as net exporter of carbon to the sea in both dry and wet seasons. From short-term observations, outwelling fluxes of mangrove-derived DOC, DIC, and POC contributed 27–53%, 8–31%, and 42%, respectively, to their estuarine outflow. Unlike other studies, such low percentage for DIC might result from other external nonmangrove input (e.g., watershed carbonate weathering). Overall estuarine carbon flux was dominated by DIC (90–95%) with only minor contribution from DOC. The approach utilized in this study to estimate lateral carbon flux specific to a small mangrove setting can be useful in delineating blue carbon budgets that avoid geographical and methodological biases.We are grateful to the Japan International Cooperation Agency (JICA) and Japan Science and Technology Agency (JST) through the Science and Technology Research Partnership for Sustainable Development Program (SATREPS) for financially supporting the Project “Comprehensive Assessment and Conservation of Blue Carbon Ecosystems and their Services in the Coral Triangle (BlueCARES).” We are indebted to Dr Gerd Gleixner and Steffen Ruehlow (MPI-Jena, Germany) for providing support in δ13DOC analyses, and Dr Naoko Morimoto for POM analyses. We sincerely thank Dr Kenji Ono for sharing fine root production data. We are thankful to Dr Ariel Blanco (Department of Geodetic Engineering, UP Diliman) for providing delineation of mangrove area and Dr. Enrico C. Paringit, program leader of Phil-LiDAR 1, for providing the LiDAR products for map preparation. We thank Jeffrey Munar, Jesus Abad, John Michael Aguilar, Dominic Bautista, Bryan C. Hernandez and Mr Tsuyoshi Kanda for their assistance during field surveys. We are grateful for the overall support given by the University of the Philippines, Diliman and Aklan State University to the project. Finally, we thank the Journal Editor, Associate Editor, and three reviewers for their valuable comments and corrections on the manuscript.
- Insights into the environmental conditions contributing to variability in the larval recruitment of the tropical sardine Sardinella lemuruPata, Patrick R.; Yñiguez, Aletta T.; Deauna, Josephine Dianne L.; De Guzman, Asuncion B.; Jimenez, Cesaria R.; Rosario, Roselle T. Borja-Del; Villanoy, Cesar L. (Elsevier, 2021-07)The small pelagic fishery in the southern Philippines is one of the largest contributors to fisheries production in the country, and is dominated by the Bali sardine Sardinella lemuru. This species is a year-round spawner that has its peak spawning period during the northeast monsoon (NEM) months of November to February. However, there is still limited information on the conditions that affect this species’ survival during its early life history stages. Here, we attempt to discern the importance of temperature, prey density and advection on sardine larvae. The larvae were represented as passive particles that were released in known spawning grounds to simulate dispersal. The conditions the larvae experienced, namely, temperature and estimated prey density based on satellite chlorophyll-a values were recorded at each time step until the estimated recruitment age of 60 days. The temporal and spatial averaged conditions of recruited sardines showed that sardines spawned during the NEM months experienced higher chlorophyll-a, lower (more optimal) sea surface temperature, albeit higher advective loss, than sardines spawned during other months. Comparisons between years showed that during higher reported catch years, sardine larvae experienced lower temperatures and higher retention nearshore. Our results emphasize that sardine stock management efforts need to recognize the contribution of the temporally variable sardine environment to patterns in sardine recruitment and consequently in catches.The authors would like to thank Dr. Wilfredo Campos, Luke Felix, Dr. Rio Naguit, Denmark Recamara, and the Research for Sardines Volunteer Program (RSVP) volunteers for sharing sardine fisheries data; Arjay Cayetano for helping start the model used; and Iris Salud Bollozos for useful insights on larval ecology. This study was fully funded by the Department of Science and Technology–Philippine Council for Agriculture, Aquatic and Natural Resources Research and Development (DOSTPCAARRD) under the program, “Development of robust tools for managing sardine fisheries in the Philippines: Zamboanga Upwelling Bohol Sea System Program.” The authors declare no conflict of interest.