National Committee on Marine Sciences (NCMS)
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- Expressed sequence tags (ESTs) from the marine red alga Gracilaria gracilisLluisma, Arturo O.; Ragan, Mark A. (Springer, 1997-06)Expressed sequence tags (ESTs) are partial sequences of cDNAs, and can be used to characterize gene expression in organisms or tissues. We have constructed a 200-sequence EST database from vegetative thalli of Gracilaria gracilis, the first ESTs reported from any alga. This database contains recognizable ESTs corresponding to genes of carbohydrate metabolism (seven), amino acid metabolism (three), photosynthesis (five), nucleic acid synthesis, repair and processing (three), protein synthesis (14), protein degradation (six), cellular maintenance and stress response (three), other identifiable protein-coding genes (13) and 146 sequences for which significant matches were not found in existing sequence databases. We have already used this EST database to recover genes of carbohydrate biosynthesis from G. gracilis.
- Occurrence of closely spaced genes in the nuclear genome of the agarophyte Gracilaria gracilisLluisma, Arturo O.; Ragan, Mark A. (Springer, 1999)Little is known about the structure and organisation of nuclear genomes in red algae. In particular, it is not known whether genes are densely or loosely packed, whether gene order is conserved, whether their genes tend to occur in one or multiple copies and whether their nuclear genes tend to be compact or interrupted by numerous introns. Sequencing of cloned genomic DNA from Gracilaria gracilis has begun to provide provisional answers to some of these questions. Four pairs of closely spaced genes have been found in G. gracilis upon sequencing genomic clones that contain genes for UDPglucose pyrophosphorylase, galactose-1-phosphate uridylyltransferase, the β subunit of tryptophan synthetase, and methionine sulphoxide reductase (a fifth pair of closely spaced genes, encoding polyubiquitin and aconitase, was reported earlier). An open reading frame with significant similarity to another known gene occurs close (< 1.7 kbp) to each of these genes. In two pairs the intergenic region is less than 400 bp in length, and for these the location of the putative polyadenylation signals indicates that the gene transcripts, encoded on opposite strands, have overlapping (hence complementary) 3′ regions. These somewhat unexpected findings begin to establish a basis for genome-level characterisation of red algae.
- Differences in biomass production and carrageenan yields among four strains of farmed carrageenophytes in Northern Bohol, PhilippinesTrono, Gavino C.; Lluisma, Arturo O. (Springer, 1992-11)Comparative studies on the biomass and carrageenan production of two strains of Eucheuma denticulatum and two strains of Kappaphycus alvarezii were made to assess the seasonality in their production capacities. The high and similar refined carrageenan (RC) yields (43–53% of dry wt.) of the four strains in the first cropping season (June–October) coincided with their high biomass production with plants averaging from 1.1 to 1.8 kg each at harvest. The poor RC yields (21–33%) recorded in the second cropping (October–February) coincided with their season of low biomass (av. wt: 0.34 to 1.0 kg). The four strains, however, recorded contrasting performance in the third cropping season (February–July) with the two E. denticulatum strains recording high RC yields (43 and 42.5%) together with high biomass (av. wt: 1.5 and 1.6 kg) in contrast to the low RC yields (30 and 39%) and low biomass (av. wt. 0.21 and 0.28 kg) of the two K. alvarezii strains. Records for semi-refined carrageenan (SRC) yields in the second and third cropping seasons were quite consistent and similar for the four strains (42–55%), except in the second cropping where the two K. alvarezii strains recorded low SRC. These differences in production potentials highlight the need for cropping management of the four strains to improve their cropping performance.
- Seasonality of standing crop of a Sargassum (Fucales, Phaeophyta) bed in Bolinao, Pangasinan, PhilippinesTrono, Gavino C.; Lluisma, Arturo O. (Springer, 1990-09)The seasonality of standing crop of a Sargassum bed was investigated by conducting monthly sampling from February 1988 to July 1989. Environmental parameters of water movement, salinity, number of daytime minus tides, and water temperature were also measured. An intra-annual pattern of variation in standing crop of Sargassum crassifolium, S. cristaefolium, S. oligocystum, and S. polycystum was observed. Standing crop was generally lowest in February, March, April, or May, and highest in November through January. Sargassum accounted for about 35 to 85% of the monthly algal standing crop of the bed, and the observed variation in overall standing crop of the bed generally reflected the standing crop of Sargassum. The seasonality of the standing crops of the associated algal divisions also followed an annual cycle, but their maximum and minimum standing crops did not coincide with those of Sargassum. Individually, as well as collectively, the standing crops of the Sargassum spp. were poorly correlated with the environmental factors observed.
- Genetic diversity of Kappaphycus malesianus (Solieriaceae, Rhodophyta) from the PhilippinesDumilag, Richard V.; Crisostomo, Bea A.; Aguinaldo, Zae-Zae A.; Lluisma, Arturo O.; Gachon, Claire M.M.; Roleda, Michael Y. (Elsevier, 2023-07)Kappaphycus farming for carrageenan production is characterized by a strong selective pressure at the genetic level. Traits of agronomic importance are compromised due to domestication bottlenecks and the subsequent events of possible selective breeding of founding cultivars. Kappaphycus malesianus is farmed in Malaysia and the Philippines, and is distributed within the Malesian region. While the majority of genetically characterized specimens of this species are from Malaysia, those from the Philippines are poorly explored. Here, we assessed the genetic diversity of K. malesianus from the Philippines based on cox1 sequences. Of the 15 identified haplotypes, 14 specimens represent three novel haplotypes (wild specimens) that form a group distinct from the main clade comprising most K. malesianus haplotypes known to date. An additional haplotype from a cultivated specimen was identical to that of the most widely distributed haplotype. Our findings demonstrate that the K. malesianus is genetically more diverse than previously recognized. It is expected that higher genetic diversity may be revealed through additional sampling from a wider geographic range and careful application of integrative approaches. Future selective breeding programs in Kappaphycus would benefit from the incorporation of the genetic resources, as provided in this study.