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National Committee on Marine Sciences (NCMS)

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    Detection of horizontal gene transfer in the genome of the choanoflagellate Salpingoeca rosetta
    Matriano, Danielle M.; Alegado, Rosanna A.; Conaco, Cecilia (Springer, 2021-03-16)
    Horizontal gene transfer (HGT), the movement of heritable materials between distantly related organisms, is crucial in eukaryotic evolution. However, the scale of HGT in choanoflagellates, the closest unicellular relatives of metazoans, and its possible roles in the evolution of animal multicellularity remains unexplored. We identified at least 175 candidate HGTs in the genome of the colonial choanoflagellate Salpingoeca rosetta using sequence-based tests. The majority of these were orthologous to genes in bacterial and microalgal lineages, yet displayed genomic features consistent with the rest of the S. rosetta genome—evidence of ancient acquisition events. Putative functions include enzymes involved in amino acid and carbohydrate metabolism, cell signaling, and the synthesis of extracellular matrix components. Functions of candidate HGTs may have contributed to the ability of choanoflagellates to assimilate novel metabolites, thereby supporting adaptation, survival in diverse ecological niches, and response to external cues that are possibly critical in the evolution of multicellularity in choanoflagellates.
    We thank Joshua Dizon and Francis Tablizo of the Philippine Genome Center Core Facility for Bioinformatics for assistance with scripts and database construction. We thank Becca Lensing (University of Hawai’i), Cheryl Andam (University of New Hampshire), Deo Onda and Ron Leonard Dy (University of the Philippines) for insightful comments and suggestions on the analysis and interpretation of the data. This work was supported by thesis grants from the Department of Science and Technology Accelerated Science and Technology Human Resource Development Program-National Science Consortium (DOST-ASTHRDP-NSC) and the University of the Philippines Marine Science Institute to DM.
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    Red tide alert up in Visayas
    (Philippine Manila Standard Publishing, Inc., 2016-12-21)
    In its latest shellfish bulletin dated December 20, BFAR said the paralytic shellfish poison can still be found in Irong-Irong and Cambatutay Bays in Western Samar, Matarinao Bay in Eastern Samar, Leyte, Naval in Biliran province, Gigantes Islands in Carles, Iloilo and Dauis and Tagbilaran City in Bohol. “Fish, squids, shrimps and crabs are safe for human consumption provided that they are fresh and washed thoroughly and internal organs such as gills and intestines are removed before cooking,” said the BFAR. Red tide is a common name for a phenomenon known as an algal bloom (large concentrations of aquatic microorganisms) when it is caused by a few species of dinoflagellates and the bloom takes on a red or brown color. Red tides are events in which estuarine, marine or fresh water algae accumulate rapidly in the water column, resulting in coloration of the surface water. It is usually found in coastal areas.