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National Committee on Marine Sciences (NCMS)

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AGROVOC Keyword: search.filters.agrovoc.hydrodynamicsAuthor: search.filters.author.Uy, Wilfredo H.

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    Complex patterns of genetic structure in the sea cucumber Holothuria (Metriatyla) scabra from the Philippines: implications for aquaculture and fishery management
    Lal, Monal M.; Macahig, Deo A. S.; Juinio-Meñez, Marie A.; Altamirano, Jon P.; Noran-Baylon, Roselyn; de la Torre-de la Cruz, Margarita; Villamor, Janine L.; Gacura, Jonh Rey L.; Uy, Wilfredo H.; Mira-Honghong, Hanzel; Southgate, Paul C.; Ravago-Gotanco, Rachel (Frontiers Media SA, 2024-06-04)
    The sandfish Holothuria (Metriatyla) scabra, is a high-value tropical sea cucumber harvested from wild stocks for over four centuries in multi-species fisheries across its Indo-Pacific distribution, for the global bêche-de-mer (BDM) trade. Within Southeast Asia, the Philippines is an important centre of the BDM trade, however overharvesting and largely open fishery management have resulted in declining catch volumes. Sandfish mariculture has been developed to supplement BDM supply and assist restocking efforts; however, it is heavily reliant on wild populations for broodstock supply. Consequently, to inform fishery, mariculture, germplasm and translocation management policies for both wild and captive resources, a high-resolution genomic audit of 16 wild sandfish populations was conducted, employing a proven genotyping-by-sequencing approach for this species (DArTseq). Genomic data (8,266 selectively-neutral and 117 putatively-adaptive SNPs) were used to assess fine-scale genetic structure, diversity, relatedness, population connectivity and local adaptation at both broad (biogeographic region) and local (within-biogeographic region) scales. An independent hydrodynamic particle dispersal model was also used to assess population connectivity. The overall pattern of population differentiation at the country level for H. scabra in the Philippines is complex, with nine genetic stocks and respective management units delineated across 5 biogeographic regions: (1) Celebes Sea, (2) North and (3) South Philippine Seas, (4) South China and Internal Seas and (5) Sulu Sea. Genetic connectivity is highest within proximate marine biogeographic regions (mean Fst=0.016), with greater separation evident between geographically distant sites (Fst range=0.041–0.045). Signatures of local adaptation were detected among six biogeographic regions, with genetic bottlenecks at 5 sites, particularly within historically heavily-exploited locations in the western and central Philippines. Genetic structure is influenced by geographic distance, larval dispersal capacity, species-specific larval development and settlement attributes, variable ocean current-mediated gene flow, source and sink location geography and habitat heterogeneity across the archipelago. Data reported here will inform accurate and sustainable fishery regulation, conservation of genetic diversity, direct broodstock sourcing for mariculture and guide restocking interventions across the Philippines.
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    Hydrodynamics rather than type of coastline shapes self‐recruitment in anemonefishes
    Sato, Masaaki; Honda, Kentaro; Nakamura, Yohei; Bernardo, Lawrence Patrick C.; Bolisay, Klenthon O.; Yamamoto, Takahiro; Herrera, Eugene C.; Nakajima, Yuichi; Lian, Chunlan; Uy, Wilfredo H.; Fortes, Miguel D.; Nadaoka, Kazuo; Nakaoka, Masahiro (Wiley, 2023-07-25)
    Many marine species have a pelagic larval phase that undergo dispersal among habitats. Studies on marine larval dispersal have revealed a large variation in the spatial scale of dispersal and self-recruitment. However, few studies have investigated the influence of types of coastline (e.g., bay vs. open coast) on marine larval dispersal. Bays or lagoons generally enhance the retention of larvae, while larvae are more likely to be flushed by strong currents in open coasts. To examine associations between larval dispersal, coastline type, and hydrodynamics, we compared fin-scale dispersal patterns, self-recruitment, and local retention (LR) of two anemonefishes (Amphiprion frenatus and Amphiprion perideraion) between a semi-enclosed bay and an open coast in the Philippines combining genetic parentage analysis and biophysical dispersal modeling. Contrary to our expectations, parentage analysis revealed lower estimates of self-recruitment in the semi-closed bay (0%) than in the open coast (14–15%). The result was consistent with dispersal simulations predicting lower LR and self-recruitment in the semi-closed bay (0.4% and 19%) compared to the open coast (2.9% and 38%). Dispersal modeling also showed that cross-shore currents toward offshore were much stronger around the semi-closed bay and were negatively correlated with LR and self-recruitment. These results suggest that stronger cross-shore currents around the semi-closed bay transport anemonefish larvae to the offshore and mainly contributed to the lower self-recruitment. Our results highlight importance of hydrodynamics on larval dispersal and difficulty in predicting self-recruitment from coastline type alone.