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National Committee on Marine Sciences (NCMS)

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    Genetic diversity and population connectivity of the greenblotch parrotfish (Scarus quoyi Valenciennes, 1840) within southern Mindanao inferred from mitochondrial 16S rRNA
    Labrador, Kevin; Fortaleza, Maybelle; Cabasan, Joey; Elumba, Merlene; Nañola, Cleto (Science and Technology Information Institute, 2022-10-03)
    A genetic assessment was done on the greenblotch parrotfish (Scarus quoyi Valenciennes, 1840) in three bays within southern Mindanao, Philippines. Mitochondrial 16S rRNA recovered 12 haplotypes, one of which was dominant in all sites. Despite the reported phenotypic variation from previous assessments, there was neither evidence of genetic structure (global Φst = 0.012, p = 0.13) nor isolation by distance (r = 0.05, p = 0.50). Genetic diversity was also low (Hglobal = 0.472; πglobal = 0.13%), with ~ 77% of haplotype diversity accounted for with just 69 samples. While connectivity suggests continuous larval exchange within southern Mindanao owing to the species’ high dispersal potential, low genetic diversity implies reduced effective population size, probably due to recent bottlenecks (e.g. overfishing, habitat destruction). Although this study provides baseline genetic information on the local population, inferences are considerably limited by the genetic marker used and the spatial scale under investigation. A thorough understanding of the population will be possible if the entire habitat range of the species is assessed using markers with high resolving power, such as the hypervariable mitochondrial control region, microsatellites, or genome-wide single nucleotide polymorphisms (SNPs).
    This project was funded by the DOST-PCAARRD (Department of Science and Technology–Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development) through the projects titled “DNA Barcoding and Genetic Diversity of Selected Marine Fishes along the North Bifurcation of the North Equatorial Current (NEC)” and “DNA Barcoding of Selected Marine Fishes in Davao and Sulu Archipelago (MINDA).” Sample collection was covered by the DARETO (Discovery-Applied Research and Extension for Trans/Inter-disciplinary Opportunities) research grant under CHED (Commission on Higher Education) through the project entitled “Bioeconomic Assessment and Modelling of Reef Fisheries and Sustainable Harvest Project”. We would like to thank Junissa M. Consuegra, Joemarie J. Lanutan, and Jodi Eugenia Lourdes F. del Fierro for their assistance in sample collection and laboratory work.
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    Genetic structure of giant clam (Tridacna derasa) populations from reefs in the Indo-Pacific
    Macaranas, J. M.; Ablan, C. A.; Pante, M. J. R.; Benzie, J. A. H.; Williams, S. T. (Springer, 1992-06)
    Large genetic differences were observed among the Great Barrier Reef (GBR), Fiji and Philippine populations of Tridacna derasa (Roding) sampled in 1989 and 1990 (Nei's unbiased genetic distance, D,=0.137 to 0.341). This result contrasted strongly with the low genetic distance (D=0.032) reported previously for the giant clam T. maxima over similar geographical scales. No significant genetic differentiation was observed among most populations from the GBR (mean D=0.007), consistent with the high gene exchange expected in this highly connected reef system. However, significant differentiation resulting from differences in the frequencies of less common alleles between the North-Central GBR and South GBR (Swain region) were observed. Historical isolation of blocks of the Central Indo-West Pacific from the GBR and present-day restrictions to gene exchange between the GBR, Fiji and the Philippines as a result of oceanographic current patterns, were thought to be responsible for the high degree of genetic differentiation of T. derasa populations. The relevance of these findings to clam mariculture and reef restocking are briefly discussed.